plotRf: Plot recombination frequencies

In pergola: Toolbox for Polyploid Genetic Data

Description

Graphical representation of recombination frequencies to support supervised estimation of the numbers of clusters

Usage

plotRf(rf, plottype = "dendrogram", method = "single", cex.axis = 1, ...)

Arguments

rf	Matrix of pairwise recombination frequencies.
plottype	Default is "dendrogram". Any other value will plot the recombination frequencies.
method	Default is "single", which is used for the hierarchical clustering.
cex.axis	Size of axis labels in image plot.
...	arguments are forwarded to image.

Value

None.

Examples

data(simTetra)
simTetraGen <- bases2genotypes(simTetra, 4)
rfMat <- calcRec(simTetraGen, 4)
plotRf(rfMat)

pergola documentation built on May 2, 2019, 3:22 a.m.