swapChrs: Swap chromosomes

Description Usage Arguments Value Examples

Description

Finds best matching chromosome for each chromosome and brings them into the same order.

Usage

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swapChrs(map, comp)

Arguments

map

Map to switch.

comp

Other map for comparison.

Value

map

Examples

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data(simTetra)
simTetrageno <- bases2genotypes(simTetra, 4)
rfMat <- calcRec(simTetrageno, 4)
split <- splitChr(rfMat, nchr = 7)
split <- sortLeafs(rfMat, split)
map <- pullMap(rfMat, split = split)   
split <- sortLeafs(rfMat, split, method = "endlink")
map2 <- pullMap(rfMat, split = split)   
map <- swapChrs(map, map2)

pergola documentation built on May 2, 2019, 3:22 a.m.