switchChrs: Switch Chromosomes

In pergola: Toolbox for Polyploid Genetic Data

Description

Wrapper function to switch chromosomes for the whole map

Usage

switchChrs(map, comp)

Arguments

map	Map to switch.
comp	Other map for comparison.

Value

map

Examples

data(simTetra)
simTetrageno <- bases2genotypes(simTetra, 4)
rfMat <- calcRec(simTetrageno, 4)
split <- splitChr(rfMat, nchr = 7)
split <- sortLeafs(rfMat, split)
map <- pullMap(rfMat, split = split)   
split <- sortLeafs(rfMat, split, method = "endlink")
map2 <- pullMap(rfMat, split = split)   
map <- switchChrs(map, map2)

pergola documentation built on May 2, 2019, 3:22 a.m.