plsRglm: Partial Least Squares Regression for Generalized Linear Models

Provides (weighted) Partial least squares Regression for generalized linear models and repeated k-fold cross-validation of such models using various criteria. It allows for missing data in the explanatory variables. Bootstrap confidence intervals constructions are also available.

AuthorFrederic Bertrand <frederic.bertrand@math.unistra.fr>, Nicolas Meyer <Nicolas.Meyer@nmeyer@unistra.fr>, Myriam Maumy-Bertrand <myriam.maumy-bertrand@math.unistra.fr>.
Date of publication2014-12-17 02:19:56
MaintainerFrederic Bertrand <frederic.bertrand@math.unistra.fr>
LicenseGPL-3
Version1.1.1
http://www-irma.u-strasbg.fr/~fbertran/

View on CRAN

Man pages

aic.dof: Akaike and Bayesian Information Criteria and Generalized...

AICpls: AIC function for plsR models

aze: Microsatellites Dataset

aze_compl: As aze without missing values

bootpls: Non-parametric Bootstrap for PLS models

bootplsglm: Non-parametric Bootstrap for PLS generalized linear models

bordeaux: Quality of wine dataset

boxplots.bootpls: Boxplot bootstrap distributions

coef.plsRglmmodel: coef method for plsR models

coef.plsRmodel: coef method for plsR models

coefs.plsR: Coefficients for bootstrap computations of PLSR models

coefs.plsRglm: Coefficients for bootstrap computations of PLSGLR models

coefs.plsRglmnp: Coefficients for bootstrap computations of PLSGLR models

confints.bootpls: Bootstrap confidence intervals

CorMat: Correlation matrix for simulating plsR datasets

Cornell: Cornell dataset

cv.plsR: Partial least squares regression models with k-fold...

cv.plsRglm: Partial least squares regression glm models with k-fold cross...

cvtable: Table method for summary of cross validated PLSR and PLSGLR...

dicho: Dichotomization

fowlkes: Fowlkes dataset

infcrit.dof: Information criteria

kfolds2Chisq: Computes Predicted Chisquare for k-fold cross-validated...

kfolds2Chisqind: Computes individual Predicted Chisquare for k-fold cross...

kfolds2coeff: Extracts coefficients from k-fold cross validated partial...

kfolds2CVinfos_glm: Extracts and computes information criteria and fits...

kfolds2CVinfos_lm: Extracts and computes information criteria and fits...

kfolds2Mclassed: Number of missclassified individuals for k-fold cross...

kfolds2Mclassedind: Number of missclassified individuals per group for k-fold...

kfolds2Press: Computes PRESS for k-fold cross validated partial least...

kfolds2Pressind: Computes individual PRESS for k-fold cross validated partial...

loglikpls: loglikelihood function for plsR models

permcoefs.plsR: Coefficients for permutation bootstrap computations of PLSR...

permcoefs.plsRglm: Coefficients for permutation bootstrap computations of PLSGLR...

permcoefs.plsRglmnp: Coefficients for permutation bootstrap computations of PLSGLR...

permcoefs.plsRnp: Coefficients computation for permutation bootstrap

pine: Pine dataset

pine_full: Complete Pine dataset

pine_sup: Complete Pine dataset

plots.confints.bootpls: Plot bootstrap confidence intervals

plot.table.summary.cv.plsRglmmodel: Plot method for table of summary of cross validated plsRglm...

plot.table.summary.cv.plsRmodel: Plot method for table of summary of cross validated plsR...

PLS_glm_wvc: Light version of PLS\_glm for cross validation purposes

PLS_lm_wvc: Light version of PLS\_lm for cross validation purposes

plsR: Partial least squares Regression models with leave one out...

plsR.dof: Computation of the Degrees of Freedom

plsRglm: Partial least squares Regression generalized linear models

predict.plsRglmmodel: Print method for plsRcox models

predict.plsRmodel: Print method for plsRcox models

print.coef.plsRglmmodel: Print method for plsRglm models

print.coef.plsRmodel: Print method for plsR models

print.cv.plsRglmmodel: Print method for plsRglm models

print.cv.plsRmodel: Print method for plsR models

print.plsRglmmodel: Print method for plsRglm models

print.plsRmodel: Print method for plsR models

print.summary.plsRglmmodel: Print method for summaries of plsRglm models

print.summary.plsRmodel: Print method for summaries of plsR models

signpred: Graphical assessment of the stability of selected variables

simul_data_complete: Data generating detailed process for multivariate plsR models

simul_data_UniYX: Data generating function for univariate plsR models

simul_data_UniYX_binom: Data generating function for univariate binomial plsR models

simul_data_YX: Data generating function for multivariate plsR models

summary.cv.plsRglmmodel: Summary method for plsRglm models

summary.cv.plsRmodel: Summary method for plsR models

summary.plsRglmmodel: Summary method for plsRglm models

summary.plsRmodel: Summary method for plsR models

tilt.bootpls: Tilted bootstrap for PLS models

tilt.bootplsglm: Tilted bootstrap for PLS models

XbordeauxNA: Incomplete dataset for the quality of wine dataset

XpineNAX21: Incomplete dataset from the pine caterpillars example

Functions

aic.dof Man page
AICpls Man page
aze Man page
aze_compl Man page
bic.dof Man page
bootpls Man page
bootplsglm Man page
bordeaux Man page
boxplots.bootpls Man page
coef.plsRglmmodel Man page
coef.plsRmodel Man page
coefs.plsR Man page
coefs.plsRglm Man page
coefs.plsRglmnp Man page
confints.bootpls Man page
CorMat Man page
Cornell Man page
cv.plsR Man page
cv.plsRglm Man page
cv.plsRglmmodel.default Man page
cv.plsRglmmodel.formula Man page
cv.plsRmodel.default Man page
cv.plsRmodel.formula Man page
cvtable Man page
cvtable.plsR Man page
cvtable.plsRglm Man page
dicho Man page
fowlkes Man page
gmdl.dof Man page
infcrit.dof Man page
kfolds2Chisq Man page
kfolds2Chisqind Man page
kfolds2coeff Man page
kfolds2CVinfos_glm Man page
kfolds2CVinfos_lm Man page
kfolds2Mclassed Man page
kfolds2Mclassedind Man page
kfolds2Press Man page
kfolds2Pressind Man page
loglikpls Man page
permcoefs.plsR Man page
permcoefs.plsRglm Man page
permcoefs.plsRglmnp Man page
permcoefs.plsRnp Man page
pine Man page
pine_full Man page
pine_sup Man page
plots.confints.bootpls Man page
plot.table.summary.cv.plsRglmmodel Man page
plot.table.summary.cv.plsRmodel Man page
PLS_glm Man page
PLS_glm_formula Man page
PLS_glm_kfoldcv Man page
PLS_glm_kfoldcv_formula Man page
PLS_glm_wvc Man page
PLS_lm Man page
PLS_lm_formula Man page
PLS_lm_kfoldcv Man page
PLS_lm_kfoldcv_formula Man page
PLS_lm_wvc Man page
plsR Man page
plsR.dof Man page
plsRglm Man page
plsRglmmodel.default Man page
plsRglmmodel.formula Man page
plsRmodel.default Man page
plsRmodel.formula Man page
predict.plsRglmmodel Man page
predict.plsRmodel Man page
print.coef.plsRglmmodel Man page
print.coef.plsRmodel Man page
print.cv.plsRglmmodel Man page
print.cv.plsRmodel Man page
print.plsRglmmodel Man page
print.plsRmodel Man page
print.summary.plsRglmmodel Man page
print.summary.plsRmodel Man page
signpred Man page
simul_data_complete Man page
simul_data_UniYX Man page
simul_data_UniYX_binom Man page
simul_data_YX Man page
summary.cv.plsRglmmodel Man page
summary.cv.plsRmodel Man page
summary.plsRglmmodel Man page
summary.plsRmodel Man page
tilt.bootpls Man page
tilt.bootplsglm Man page
XbordeauxNA Man page
XpineNAX21 Man page

Files

plsRglm
plsRglm/inst
plsRglm/inst/CITATION
plsRglm/inst/doc
plsRglm/inst/doc/plsRglm.pdf
plsRglm/inst/doc/plsRglm-manual.pdf.asis
plsRglm/inst/doc/plsRglm.pdf.asis
plsRglm/inst/doc/plsRglm-manual.pdf
plsRglm/NAMESPACE
plsRglm/demo
plsRglm/demo/pls_glm_family.R
plsRglm/demo/pls.R
plsRglm/demo/pls_formula.R
plsRglm/demo/pls_glm_logistic.R
plsRglm/demo/00Index
plsRglm/demo/pls_glm_polr.R
plsRglm/NEWS
plsRglm/data
plsRglm/data/CorMat.RData
plsRglm/data/pine_sup.RData
plsRglm/data/aze.RData
plsRglm/data/fowlkes.RData
plsRglm/data/XbordeauxNA.RData
plsRglm/data/Cornell.RData
plsRglm/data/pine.RData
plsRglm/data/pine_full.RData
plsRglm/data/aze_compl.RData
plsRglm/data/XpineNAX21.RData
plsRglm/data/bordeaux.RData
plsRglm/R
plsRglm/R/print.cv.plsRmodel.R plsRglm/R/loglikpls.R plsRglm/R/plsRglmmodel.formula.R plsRglm/R/simul_data_UniYX_binom.R plsRglm/R/kfolds2CVinfos_lm.R plsRglm/R/plsRglm.R plsRglm/R/plsRmodel.formula.R plsRglm/R/permcoefs.plsRglmnp.R plsRglm/R/PLS_lm.R plsRglm/R/PLS_lm_formula.R
plsRglm/R/coefs.plsRnp.r
plsRglm/R/plot.table.summary.cv.plsRglmmodel.R plsRglm/R/plot.table.summary.cv.plsRmodel.R plsRglm/R/permcoefs.plsRglm.R plsRglm/R/AICpls.R plsRglm/R/predict.plsRmodel.R plsRglm/R/cvtable.plsRglm.R plsRglm/R/cv.plsRglmmodel.formula.R plsRglm/R/coefs.plsRglm.R plsRglm/R/PLS_glm_wvc.R plsRglm/R/print.coef.plsRmodel.R plsRglm/R/kfolds2Mclassedind.R plsRglm/R/summary.cv.plsRmodel.R plsRglm/R/bic.dof.R plsRglm/R/plsRglmmodel.default.R plsRglm/R/kfolds2CVinfos_glm.R plsRglm/R/print.plsRmodel.R plsRglm/R/PLS_lm_kfoldcv_formula.R plsRglm/R/cv.plsR.R plsRglm/R/kfolds2Chisqind.R plsRglm/R/cvtable.R plsRglm/R/boxplots.bootpls.R plsRglm/R/kfolds2Mclassed.R plsRglm/R/print.cv.plsRglmmodel.R plsRglm/R/kfolds2Pressind.R plsRglm/R/plsRmodel.default.R plsRglm/R/plots.confints.bootpls.R plsRglm/R/kfolds2Chisq.R plsRglm/R/PLS_glm_formula.R plsRglm/R/coefs.plsR.R plsRglm/R/print.coef.plsRglmmodel.R plsRglm/R/cv.plsRglmmodel.default.R plsRglm/R/simul_data_UniYX.R plsRglm/R/gmdl.dof.R plsRglm/R/coefs.plsRglmnp.R plsRglm/R/print.summary.plsRglmmodel.R plsRglm/R/plsR.R plsRglm/R/print.summary.plsRmodel.R plsRglm/R/PLS_lm_wvc.R plsRglm/R/coef.plsRglmmodel.R plsRglm/R/tilt.bootplsglm.R plsRglm/R/predict.plsRglmmodel.R plsRglm/R/coef.plsRmodel.R plsRglm/R/bootplsglm.R plsRglm/R/cv.plsRmodel.default.R plsRglm/R/confints.bootpls.R plsRglm/R/cv.plsRglm.R plsRglm/R/PLS_glm_kfoldcv.R plsRglm/R/dicho.R plsRglm/R/PLS_lm_kfoldcv.R plsRglm/R/infcrit.dof.R plsRglm/R/cv.plsRmodel.formula.R plsRglm/R/PLS_glm.R plsRglm/R/summary.plsRglmmodel.R plsRglm/R/permcoefs.plsR.R plsRglm/R/PLS_glm_kfoldcv_formula.R plsRglm/R/kfolds2coeff.R plsRglm/R/simul_data_YX.R plsRglm/R/summary.cv.plsRglmmodel.R plsRglm/R/permcoefs.plsRnp.R plsRglm/R/print.plsRglmmodel.R plsRglm/R/signpred.R plsRglm/R/bootpls.R plsRglm/R/summary.plsRmodel.R plsRglm/R/simul_data_complete.R plsRglm/R/cvtable.plsR.R plsRglm/R/kfolds2Press.R plsRglm/R/plot.coef.plsRmodel.R plsRglm/R/plsR.dof.R plsRglm/R/tilt.bootpls.R plsRglm/R/aic.dof.R
plsRglm/vignettes
plsRglm/vignettes/plsRglm-manual.pdf.asis
plsRglm/vignettes/plsRglm.pdf.asis
plsRglm/MD5
plsRglm/build
plsRglm/build/vignette.rds
plsRglm/DESCRIPTION
plsRglm/man
plsRglm/man/coefs.plsRglmnp.Rd plsRglm/man/summary.cv.plsRglmmodel.Rd plsRglm/man/confints.bootpls.Rd plsRglm/man/permcoefs.plsRglmnp.Rd plsRglm/man/tilt.bootpls.Rd plsRglm/man/pine_sup.Rd plsRglm/man/plsR.dof.Rd plsRglm/man/plots.confints.bootpls.Rd plsRglm/man/print.coef.plsRglmmodel.Rd plsRglm/man/kfolds2Mclassed.Rd plsRglm/man/pine_full.Rd plsRglm/man/coef.plsRglmmodel.Rd plsRglm/man/kfolds2CVinfos_glm.Rd plsRglm/man/coef.plsRmodel.Rd plsRglm/man/predict.plsRglmmodel.Rd plsRglm/man/print.cv.plsRmodel.Rd plsRglm/man/aze_compl.Rd plsRglm/man/PLS_lm_wvc.Rd plsRglm/man/permcoefs.plsRglm.Rd plsRglm/man/kfolds2Pressind.Rd plsRglm/man/simul_data_UniYX_binom.Rd plsRglm/man/simul_data_YX.Rd plsRglm/man/kfolds2Chisq.Rd plsRglm/man/XbordeauxNA.Rd plsRglm/man/boxplots.bootpls.Rd plsRglm/man/simul_data_UniYX.Rd plsRglm/man/summary.plsRglmmodel.Rd plsRglm/man/print.summary.plsRglmmodel.Rd plsRglm/man/print.cv.plsRglmmodel.Rd plsRglm/man/XpineNAX21.Rd plsRglm/man/bootplsglm.Rd plsRglm/man/print.coef.plsRmodel.Rd plsRglm/man/PLS_glm_wvc.Rd plsRglm/man/pine.Rd plsRglm/man/plot.table.summary.cv.plsRglmmodel.Rd plsRglm/man/kfolds2Mclassedind.Rd plsRglm/man/signpred.Rd plsRglm/man/cvtable.Rd plsRglm/man/cv.plsR.Rd plsRglm/man/kfolds2coeff.Rd plsRglm/man/summary.plsRmodel.Rd plsRglm/man/kfolds2CVinfos_lm.Rd plsRglm/man/bordeaux.Rd plsRglm/man/predict.plsRmodel.Rd plsRglm/man/plsRglm.Rd plsRglm/man/infcrit.dof.Rd plsRglm/man/Cornell.Rd plsRglm/man/cv.plsRglm.Rd plsRglm/man/AICpls.Rd plsRglm/man/fowlkes.Rd plsRglm/man/loglikpls.Rd plsRglm/man/print.summary.plsRmodel.Rd plsRglm/man/plsR.Rd plsRglm/man/print.plsRmodel.Rd plsRglm/man/print.plsRglmmodel.Rd plsRglm/man/bootpls.Rd plsRglm/man/permcoefs.plsR.Rd plsRglm/man/coefs.plsR.Rd plsRglm/man/tilt.bootplsglm.Rd plsRglm/man/plot.table.summary.cv.plsRmodel.Rd plsRglm/man/CorMat.Rd plsRglm/man/kfolds2Chisqind.Rd plsRglm/man/aze.Rd plsRglm/man/coefs.plsRglm.Rd plsRglm/man/dicho.Rd
plsRglm/man/coefs.plsRnp.rd
plsRglm/man/aic.dof.Rd plsRglm/man/summary.cv.plsRmodel.Rd plsRglm/man/kfolds2Press.Rd plsRglm/man/simul_data_complete.Rd plsRglm/man/permcoefs.plsRnp.Rd

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