plsRglm: Partial Least Squares Regression for Generalized Linear Models

Share:

Provides (weighted) Partial least squares Regression for generalized linear models and repeated k-fold cross-validation of such models using various criteria. It allows for missing data in the explanatory variables. Bootstrap confidence intervals constructions are also available.

Author
Frederic Bertrand <frederic.bertrand@math.unistra.fr>, Nicolas Meyer <Nicolas.Meyer@nmeyer@unistra.fr>, Myriam Maumy-Bertrand <myriam.maumy-bertrand@math.unistra.fr>.
Date of publication
2014-12-17 02:19:56
Maintainer
Frederic Bertrand <frederic.bertrand@math.unistra.fr>
License
GPL-3
Version
1.1.1
URLs

View on CRAN

Man pages

aic.dof
Akaike and Bayesian Information Criteria and Generalized...
AICpls
AIC function for plsR models
aze
Microsatellites Dataset
aze_compl
As aze without missing values
bootpls
Non-parametric Bootstrap for PLS models
bootplsglm
Non-parametric Bootstrap for PLS generalized linear models
bordeaux
Quality of wine dataset
boxplots.bootpls
Boxplot bootstrap distributions
coef.plsRglmmodel
coef method for plsR models
coef.plsRmodel
coef method for plsR models
coefs.plsR
Coefficients for bootstrap computations of PLSR models
coefs.plsRglm
Coefficients for bootstrap computations of PLSGLR models
coefs.plsRglmnp
Coefficients for bootstrap computations of PLSGLR models
confints.bootpls
Bootstrap confidence intervals
CorMat
Correlation matrix for simulating plsR datasets
Cornell
Cornell dataset
cv.plsR
Partial least squares regression models with k-fold...
cv.plsRglm
Partial least squares regression glm models with k-fold cross...
cvtable
Table method for summary of cross validated PLSR and PLSGLR...
dicho
Dichotomization
fowlkes
Fowlkes dataset
infcrit.dof
Information criteria
kfolds2Chisq
Computes Predicted Chisquare for k-fold cross-validated...
kfolds2Chisqind
Computes individual Predicted Chisquare for k-fold cross...
kfolds2coeff
Extracts coefficients from k-fold cross validated partial...
kfolds2CVinfos_glm
Extracts and computes information criteria and fits...
kfolds2CVinfos_lm
Extracts and computes information criteria and fits...
kfolds2Mclassed
Number of missclassified individuals for k-fold cross...
kfolds2Mclassedind
Number of missclassified individuals per group for k-fold...
kfolds2Press
Computes PRESS for k-fold cross validated partial least...
kfolds2Pressind
Computes individual PRESS for k-fold cross validated partial...
loglikpls
loglikelihood function for plsR models
permcoefs.plsR
Coefficients for permutation bootstrap computations of PLSR...
permcoefs.plsRglm
Coefficients for permutation bootstrap computations of PLSGLR...
permcoefs.plsRglmnp
Coefficients for permutation bootstrap computations of PLSGLR...
permcoefs.plsRnp
Coefficients computation for permutation bootstrap
pine
Pine dataset
pine_full
Complete Pine dataset
pine_sup
Complete Pine dataset
plots.confints.bootpls
Plot bootstrap confidence intervals
plot.table.summary.cv.plsRglmmodel
Plot method for table of summary of cross validated plsRglm...
plot.table.summary.cv.plsRmodel
Plot method for table of summary of cross validated plsR...
PLS_glm_wvc
Light version of PLS\_glm for cross validation purposes
PLS_lm_wvc
Light version of PLS\_lm for cross validation purposes
plsR
Partial least squares Regression models with leave one out...
plsR.dof
Computation of the Degrees of Freedom
plsRglm
Partial least squares Regression generalized linear models
predict.plsRglmmodel
Print method for plsRcox models
predict.plsRmodel
Print method for plsRcox models
print.coef.plsRglmmodel
Print method for plsRglm models
print.coef.plsRmodel
Print method for plsR models
print.cv.plsRglmmodel
Print method for plsRglm models
print.cv.plsRmodel
Print method for plsR models
print.plsRglmmodel
Print method for plsRglm models
print.plsRmodel
Print method for plsR models
print.summary.plsRglmmodel
Print method for summaries of plsRglm models
print.summary.plsRmodel
Print method for summaries of plsR models
signpred
Graphical assessment of the stability of selected variables
simul_data_complete
Data generating detailed process for multivariate plsR models
simul_data_UniYX
Data generating function for univariate plsR models
simul_data_UniYX_binom
Data generating function for univariate binomial plsR models
simul_data_YX
Data generating function for multivariate plsR models
summary.cv.plsRglmmodel
Summary method for plsRglm models
summary.cv.plsRmodel
Summary method for plsR models
summary.plsRglmmodel
Summary method for plsRglm models
summary.plsRmodel
Summary method for plsR models
tilt.bootpls
Tilted bootstrap for PLS models
tilt.bootplsglm
Tilted bootstrap for PLS models
XbordeauxNA
Incomplete dataset for the quality of wine dataset
XpineNAX21
Incomplete dataset from the pine caterpillars example

Files in this package

plsRglm
plsRglm/inst
plsRglm/inst/CITATION
plsRglm/inst/doc
plsRglm/inst/doc/plsRglm.pdf
plsRglm/inst/doc/plsRglm-manual.pdf.asis
plsRglm/inst/doc/plsRglm.pdf.asis
plsRglm/inst/doc/plsRglm-manual.pdf
plsRglm/NAMESPACE
plsRglm/demo
plsRglm/demo/pls_glm_family.R
plsRglm/demo/pls.R
plsRglm/demo/pls_formula.R
plsRglm/demo/pls_glm_logistic.R
plsRglm/demo/00Index
plsRglm/demo/pls_glm_polr.R
plsRglm/NEWS
plsRglm/data
plsRglm/data/CorMat.RData
plsRglm/data/pine_sup.RData
plsRglm/data/aze.RData
plsRglm/data/fowlkes.RData
plsRglm/data/XbordeauxNA.RData
plsRglm/data/Cornell.RData
plsRglm/data/pine.RData
plsRglm/data/pine_full.RData
plsRglm/data/aze_compl.RData
plsRglm/data/XpineNAX21.RData
plsRglm/data/bordeaux.RData
plsRglm/R
plsRglm/R/print.cv.plsRmodel.R
plsRglm/R/loglikpls.R
plsRglm/R/plsRglmmodel.formula.R
plsRglm/R/simul_data_UniYX_binom.R
plsRglm/R/kfolds2CVinfos_lm.R
plsRglm/R/plsRglm.R
plsRglm/R/plsRmodel.formula.R
plsRglm/R/permcoefs.plsRglmnp.R
plsRglm/R/PLS_lm.R
plsRglm/R/PLS_lm_formula.R
plsRglm/R/coefs.plsRnp.r
plsRglm/R/plot.table.summary.cv.plsRglmmodel.R
plsRglm/R/plot.table.summary.cv.plsRmodel.R
plsRglm/R/permcoefs.plsRglm.R
plsRglm/R/AICpls.R
plsRglm/R/predict.plsRmodel.R
plsRglm/R/cvtable.plsRglm.R
plsRglm/R/cv.plsRglmmodel.formula.R
plsRglm/R/coefs.plsRglm.R
plsRglm/R/PLS_glm_wvc.R
plsRglm/R/print.coef.plsRmodel.R
plsRglm/R/kfolds2Mclassedind.R
plsRglm/R/summary.cv.plsRmodel.R
plsRglm/R/bic.dof.R
plsRglm/R/plsRglmmodel.default.R
plsRglm/R/kfolds2CVinfos_glm.R
plsRglm/R/print.plsRmodel.R
plsRglm/R/PLS_lm_kfoldcv_formula.R
plsRglm/R/cv.plsR.R
plsRglm/R/kfolds2Chisqind.R
plsRglm/R/cvtable.R
plsRglm/R/boxplots.bootpls.R
plsRglm/R/kfolds2Mclassed.R
plsRglm/R/print.cv.plsRglmmodel.R
plsRglm/R/kfolds2Pressind.R
plsRglm/R/plsRmodel.default.R
plsRglm/R/plots.confints.bootpls.R
plsRglm/R/kfolds2Chisq.R
plsRglm/R/PLS_glm_formula.R
plsRglm/R/coefs.plsR.R
plsRglm/R/print.coef.plsRglmmodel.R
plsRglm/R/cv.plsRglmmodel.default.R
plsRglm/R/simul_data_UniYX.R
plsRglm/R/gmdl.dof.R
plsRglm/R/coefs.plsRglmnp.R
plsRglm/R/print.summary.plsRglmmodel.R
plsRglm/R/plsR.R
plsRglm/R/print.summary.plsRmodel.R
plsRglm/R/PLS_lm_wvc.R
plsRglm/R/coef.plsRglmmodel.R
plsRglm/R/tilt.bootplsglm.R
plsRglm/R/predict.plsRglmmodel.R
plsRglm/R/coef.plsRmodel.R
plsRglm/R/bootplsglm.R
plsRglm/R/cv.plsRmodel.default.R
plsRglm/R/confints.bootpls.R
plsRglm/R/cv.plsRglm.R
plsRglm/R/PLS_glm_kfoldcv.R
plsRglm/R/dicho.R
plsRglm/R/PLS_lm_kfoldcv.R
plsRglm/R/infcrit.dof.R
plsRglm/R/cv.plsRmodel.formula.R
plsRglm/R/PLS_glm.R
plsRglm/R/summary.plsRglmmodel.R
plsRglm/R/permcoefs.plsR.R
plsRglm/R/PLS_glm_kfoldcv_formula.R
plsRglm/R/kfolds2coeff.R
plsRglm/R/simul_data_YX.R
plsRglm/R/summary.cv.plsRglmmodel.R
plsRglm/R/permcoefs.plsRnp.R
plsRglm/R/print.plsRglmmodel.R
plsRglm/R/signpred.R
plsRglm/R/bootpls.R
plsRglm/R/summary.plsRmodel.R
plsRglm/R/simul_data_complete.R
plsRglm/R/cvtable.plsR.R
plsRglm/R/kfolds2Press.R
plsRglm/R/plot.coef.plsRmodel.R
plsRglm/R/plsR.dof.R
plsRglm/R/tilt.bootpls.R
plsRglm/R/aic.dof.R
plsRglm/vignettes
plsRglm/vignettes/plsRglm-manual.pdf.asis
plsRglm/vignettes/plsRglm.pdf.asis
plsRglm/MD5
plsRglm/build
plsRglm/build/vignette.rds
plsRglm/DESCRIPTION
plsRglm/man
plsRglm/man/coefs.plsRglmnp.Rd
plsRglm/man/summary.cv.plsRglmmodel.Rd
plsRglm/man/confints.bootpls.Rd
plsRglm/man/permcoefs.plsRglmnp.Rd
plsRglm/man/tilt.bootpls.Rd
plsRglm/man/pine_sup.Rd
plsRglm/man/plsR.dof.Rd
plsRglm/man/plots.confints.bootpls.Rd
plsRglm/man/print.coef.plsRglmmodel.Rd
plsRglm/man/kfolds2Mclassed.Rd
plsRglm/man/pine_full.Rd
plsRglm/man/coef.plsRglmmodel.Rd
plsRglm/man/kfolds2CVinfos_glm.Rd
plsRglm/man/coef.plsRmodel.Rd
plsRglm/man/predict.plsRglmmodel.Rd
plsRglm/man/print.cv.plsRmodel.Rd
plsRglm/man/aze_compl.Rd
plsRglm/man/PLS_lm_wvc.Rd
plsRglm/man/permcoefs.plsRglm.Rd
plsRglm/man/kfolds2Pressind.Rd
plsRglm/man/simul_data_UniYX_binom.Rd
plsRglm/man/simul_data_YX.Rd
plsRglm/man/kfolds2Chisq.Rd
plsRglm/man/XbordeauxNA.Rd
plsRglm/man/boxplots.bootpls.Rd
plsRglm/man/simul_data_UniYX.Rd
plsRglm/man/summary.plsRglmmodel.Rd
plsRglm/man/print.summary.plsRglmmodel.Rd
plsRglm/man/print.cv.plsRglmmodel.Rd
plsRglm/man/XpineNAX21.Rd
plsRglm/man/bootplsglm.Rd
plsRglm/man/print.coef.plsRmodel.Rd
plsRglm/man/PLS_glm_wvc.Rd
plsRglm/man/pine.Rd
plsRglm/man/plot.table.summary.cv.plsRglmmodel.Rd
plsRglm/man/kfolds2Mclassedind.Rd
plsRglm/man/signpred.Rd
plsRglm/man/cvtable.Rd
plsRglm/man/cv.plsR.Rd
plsRglm/man/kfolds2coeff.Rd
plsRglm/man/summary.plsRmodel.Rd
plsRglm/man/kfolds2CVinfos_lm.Rd
plsRglm/man/bordeaux.Rd
plsRglm/man/predict.plsRmodel.Rd
plsRglm/man/plsRglm.Rd
plsRglm/man/infcrit.dof.Rd
plsRglm/man/Cornell.Rd
plsRglm/man/cv.plsRglm.Rd
plsRglm/man/AICpls.Rd
plsRglm/man/fowlkes.Rd
plsRglm/man/loglikpls.Rd
plsRglm/man/print.summary.plsRmodel.Rd
plsRglm/man/plsR.Rd
plsRglm/man/print.plsRmodel.Rd
plsRglm/man/print.plsRglmmodel.Rd
plsRglm/man/bootpls.Rd
plsRglm/man/permcoefs.plsR.Rd
plsRglm/man/coefs.plsR.Rd
plsRglm/man/tilt.bootplsglm.Rd
plsRglm/man/plot.table.summary.cv.plsRmodel.Rd
plsRglm/man/CorMat.Rd
plsRglm/man/kfolds2Chisqind.Rd
plsRglm/man/aze.Rd
plsRglm/man/coefs.plsRglm.Rd
plsRglm/man/dicho.Rd
plsRglm/man/coefs.plsRnp.rd
plsRglm/man/aic.dof.Rd
plsRglm/man/summary.cv.plsRmodel.Rd
plsRglm/man/kfolds2Press.Rd
plsRglm/man/simul_data_complete.Rd
plsRglm/man/permcoefs.plsRnp.Rd