plsRglm: Partial Least Squares Regression for Generalized Linear Models

Provides (weighted) Partial least squares Regression for generalized linear models and repeated k-fold cross-validation of such models using various criteria. It allows for missing data in the explanatory variables. Bootstrap confidence intervals constructions are also available.

AuthorFrederic Bertrand <frederic.bertrand@math.unistra.fr>, Nicolas Meyer <Nicolas.Meyer@nmeyer@unistra.fr>, Myriam Maumy-Bertrand <myriam.maumy-bertrand@math.unistra.fr>.
Date of publication2014-12-17 02:19:56
MaintainerFrederic Bertrand <frederic.bertrand@math.unistra.fr>
LicenseGPL-3
Version1.1.1
http://www-irma.u-strasbg.fr/~fbertran/

View on CRAN

Man pages

aic.dof: Akaike and Bayesian Information Criteria and Generalized...

AICpls: AIC function for plsR models

aze: Microsatellites Dataset

aze_compl: As aze without missing values

bootpls: Non-parametric Bootstrap for PLS models

bootplsglm: Non-parametric Bootstrap for PLS generalized linear models

bordeaux: Quality of wine dataset

boxplots.bootpls: Boxplot bootstrap distributions

coef.plsRglmmodel: coef method for plsR models

coef.plsRmodel: coef method for plsR models

coefs.plsR: Coefficients for bootstrap computations of PLSR models

coefs.plsRglm: Coefficients for bootstrap computations of PLSGLR models

coefs.plsRglmnp: Coefficients for bootstrap computations of PLSGLR models

confints.bootpls: Bootstrap confidence intervals

CorMat: Correlation matrix for simulating plsR datasets

Cornell: Cornell dataset

cv.plsR: Partial least squares regression models with k-fold...

cv.plsRglm: Partial least squares regression glm models with k-fold cross...

cvtable: Table method for summary of cross validated PLSR and PLSGLR...

dicho: Dichotomization

fowlkes: Fowlkes dataset

infcrit.dof: Information criteria

kfolds2Chisq: Computes Predicted Chisquare for k-fold cross-validated...

kfolds2Chisqind: Computes individual Predicted Chisquare for k-fold cross...

kfolds2coeff: Extracts coefficients from k-fold cross validated partial...

kfolds2CVinfos_glm: Extracts and computes information criteria and fits...

kfolds2CVinfos_lm: Extracts and computes information criteria and fits...

kfolds2Mclassed: Number of missclassified individuals for k-fold cross...

kfolds2Mclassedind: Number of missclassified individuals per group for k-fold...

kfolds2Press: Computes PRESS for k-fold cross validated partial least...

kfolds2Pressind: Computes individual PRESS for k-fold cross validated partial...

loglikpls: loglikelihood function for plsR models

permcoefs.plsR: Coefficients for permutation bootstrap computations of PLSR...

permcoefs.plsRglm: Coefficients for permutation bootstrap computations of PLSGLR...

permcoefs.plsRglmnp: Coefficients for permutation bootstrap computations of PLSGLR...

permcoefs.plsRnp: Coefficients computation for permutation bootstrap

pine: Pine dataset

pine_full: Complete Pine dataset

pine_sup: Complete Pine dataset

plots.confints.bootpls: Plot bootstrap confidence intervals

plot.table.summary.cv.plsRglmmodel: Plot method for table of summary of cross validated plsRglm...

plot.table.summary.cv.plsRmodel: Plot method for table of summary of cross validated plsR...

PLS_glm_wvc: Light version of PLS\_glm for cross validation purposes

PLS_lm_wvc: Light version of PLS\_lm for cross validation purposes

plsR: Partial least squares Regression models with leave one out...

plsR.dof: Computation of the Degrees of Freedom

plsRglm: Partial least squares Regression generalized linear models

predict.plsRglmmodel: Print method for plsRcox models

predict.plsRmodel: Print method for plsRcox models

print.coef.plsRglmmodel: Print method for plsRglm models

print.coef.plsRmodel: Print method for plsR models

print.cv.plsRglmmodel: Print method for plsRglm models

print.cv.plsRmodel: Print method for plsR models

print.plsRglmmodel: Print method for plsRglm models

print.plsRmodel: Print method for plsR models

print.summary.plsRglmmodel: Print method for summaries of plsRglm models

print.summary.plsRmodel: Print method for summaries of plsR models

signpred: Graphical assessment of the stability of selected variables

simul_data_complete: Data generating detailed process for multivariate plsR models

simul_data_UniYX: Data generating function for univariate plsR models

simul_data_UniYX_binom: Data generating function for univariate binomial plsR models

simul_data_YX: Data generating function for multivariate plsR models

summary.cv.plsRglmmodel: Summary method for plsRglm models

summary.cv.plsRmodel: Summary method for plsR models

summary.plsRglmmodel: Summary method for plsRglm models

summary.plsRmodel: Summary method for plsR models

tilt.bootpls: Tilted bootstrap for PLS models

tilt.bootplsglm: Tilted bootstrap for PLS models

XbordeauxNA: Incomplete dataset for the quality of wine dataset

XpineNAX21: Incomplete dataset from the pine caterpillars example

Files in this package

plsRglm
plsRglm/inst
plsRglm/inst/CITATION
plsRglm/inst/doc
plsRglm/inst/doc/plsRglm.pdf
plsRglm/inst/doc/plsRglm-manual.pdf.asis
plsRglm/inst/doc/plsRglm.pdf.asis
plsRglm/inst/doc/plsRglm-manual.pdf
plsRglm/NAMESPACE
plsRglm/demo
plsRglm/demo/pls_glm_family.R
plsRglm/demo/pls.R
plsRglm/demo/pls_formula.R
plsRglm/demo/pls_glm_logistic.R
plsRglm/demo/00Index
plsRglm/demo/pls_glm_polr.R
plsRglm/NEWS
plsRglm/data
plsRglm/data/CorMat.RData
plsRglm/data/pine_sup.RData
plsRglm/data/aze.RData
plsRglm/data/fowlkes.RData
plsRglm/data/XbordeauxNA.RData
plsRglm/data/Cornell.RData
plsRglm/data/pine.RData
plsRglm/data/pine_full.RData
plsRglm/data/aze_compl.RData
plsRglm/data/XpineNAX21.RData
plsRglm/data/bordeaux.RData
plsRglm/R
plsRglm/R/print.cv.plsRmodel.R plsRglm/R/loglikpls.R plsRglm/R/plsRglmmodel.formula.R plsRglm/R/simul_data_UniYX_binom.R plsRglm/R/kfolds2CVinfos_lm.R plsRglm/R/plsRglm.R plsRglm/R/plsRmodel.formula.R plsRglm/R/permcoefs.plsRglmnp.R plsRglm/R/PLS_lm.R plsRglm/R/PLS_lm_formula.R
plsRglm/R/coefs.plsRnp.r
plsRglm/R/plot.table.summary.cv.plsRglmmodel.R plsRglm/R/plot.table.summary.cv.plsRmodel.R plsRglm/R/permcoefs.plsRglm.R plsRglm/R/AICpls.R plsRglm/R/predict.plsRmodel.R plsRglm/R/cvtable.plsRglm.R plsRglm/R/cv.plsRglmmodel.formula.R plsRglm/R/coefs.plsRglm.R plsRglm/R/PLS_glm_wvc.R plsRglm/R/print.coef.plsRmodel.R plsRglm/R/kfolds2Mclassedind.R plsRglm/R/summary.cv.plsRmodel.R plsRglm/R/bic.dof.R plsRglm/R/plsRglmmodel.default.R plsRglm/R/kfolds2CVinfos_glm.R plsRglm/R/print.plsRmodel.R plsRglm/R/PLS_lm_kfoldcv_formula.R plsRglm/R/cv.plsR.R plsRglm/R/kfolds2Chisqind.R plsRglm/R/cvtable.R plsRglm/R/boxplots.bootpls.R plsRglm/R/kfolds2Mclassed.R plsRglm/R/print.cv.plsRglmmodel.R plsRglm/R/kfolds2Pressind.R plsRglm/R/plsRmodel.default.R plsRglm/R/plots.confints.bootpls.R plsRglm/R/kfolds2Chisq.R plsRglm/R/PLS_glm_formula.R plsRglm/R/coefs.plsR.R plsRglm/R/print.coef.plsRglmmodel.R plsRglm/R/cv.plsRglmmodel.default.R plsRglm/R/simul_data_UniYX.R plsRglm/R/gmdl.dof.R plsRglm/R/coefs.plsRglmnp.R plsRglm/R/print.summary.plsRglmmodel.R plsRglm/R/plsR.R plsRglm/R/print.summary.plsRmodel.R plsRglm/R/PLS_lm_wvc.R plsRglm/R/coef.plsRglmmodel.R plsRglm/R/tilt.bootplsglm.R plsRglm/R/predict.plsRglmmodel.R plsRglm/R/coef.plsRmodel.R plsRglm/R/bootplsglm.R plsRglm/R/cv.plsRmodel.default.R plsRglm/R/confints.bootpls.R plsRglm/R/cv.plsRglm.R plsRglm/R/PLS_glm_kfoldcv.R plsRglm/R/dicho.R plsRglm/R/PLS_lm_kfoldcv.R plsRglm/R/infcrit.dof.R plsRglm/R/cv.plsRmodel.formula.R plsRglm/R/PLS_glm.R plsRglm/R/summary.plsRglmmodel.R plsRglm/R/permcoefs.plsR.R plsRglm/R/PLS_glm_kfoldcv_formula.R plsRglm/R/kfolds2coeff.R plsRglm/R/simul_data_YX.R plsRglm/R/summary.cv.plsRglmmodel.R plsRglm/R/permcoefs.plsRnp.R plsRglm/R/print.plsRglmmodel.R plsRglm/R/signpred.R plsRglm/R/bootpls.R plsRglm/R/summary.plsRmodel.R plsRglm/R/simul_data_complete.R plsRglm/R/cvtable.plsR.R plsRglm/R/kfolds2Press.R plsRglm/R/plot.coef.plsRmodel.R plsRglm/R/plsR.dof.R plsRglm/R/tilt.bootpls.R plsRglm/R/aic.dof.R
plsRglm/vignettes
plsRglm/vignettes/plsRglm-manual.pdf.asis
plsRglm/vignettes/plsRglm.pdf.asis
plsRglm/MD5
plsRglm/build
plsRglm/build/vignette.rds
plsRglm/DESCRIPTION
plsRglm/man
plsRglm/man/coefs.plsRglmnp.Rd plsRglm/man/summary.cv.plsRglmmodel.Rd plsRglm/man/confints.bootpls.Rd plsRglm/man/permcoefs.plsRglmnp.Rd plsRglm/man/tilt.bootpls.Rd plsRglm/man/pine_sup.Rd plsRglm/man/plsR.dof.Rd plsRglm/man/plots.confints.bootpls.Rd plsRglm/man/print.coef.plsRglmmodel.Rd plsRglm/man/kfolds2Mclassed.Rd plsRglm/man/pine_full.Rd plsRglm/man/coef.plsRglmmodel.Rd plsRglm/man/kfolds2CVinfos_glm.Rd plsRglm/man/coef.plsRmodel.Rd plsRglm/man/predict.plsRglmmodel.Rd plsRglm/man/print.cv.plsRmodel.Rd plsRglm/man/aze_compl.Rd plsRglm/man/PLS_lm_wvc.Rd plsRglm/man/permcoefs.plsRglm.Rd plsRglm/man/kfolds2Pressind.Rd plsRglm/man/simul_data_UniYX_binom.Rd plsRglm/man/simul_data_YX.Rd plsRglm/man/kfolds2Chisq.Rd plsRglm/man/XbordeauxNA.Rd plsRglm/man/boxplots.bootpls.Rd plsRglm/man/simul_data_UniYX.Rd plsRglm/man/summary.plsRglmmodel.Rd plsRglm/man/print.summary.plsRglmmodel.Rd plsRglm/man/print.cv.plsRglmmodel.Rd plsRglm/man/XpineNAX21.Rd plsRglm/man/bootplsglm.Rd plsRglm/man/print.coef.plsRmodel.Rd plsRglm/man/PLS_glm_wvc.Rd plsRglm/man/pine.Rd plsRglm/man/plot.table.summary.cv.plsRglmmodel.Rd plsRglm/man/kfolds2Mclassedind.Rd plsRglm/man/signpred.Rd plsRglm/man/cvtable.Rd plsRglm/man/cv.plsR.Rd plsRglm/man/kfolds2coeff.Rd plsRglm/man/summary.plsRmodel.Rd plsRglm/man/kfolds2CVinfos_lm.Rd plsRglm/man/bordeaux.Rd plsRglm/man/predict.plsRmodel.Rd plsRglm/man/plsRglm.Rd plsRglm/man/infcrit.dof.Rd plsRglm/man/Cornell.Rd plsRglm/man/cv.plsRglm.Rd plsRglm/man/AICpls.Rd plsRglm/man/fowlkes.Rd plsRglm/man/loglikpls.Rd plsRglm/man/print.summary.plsRmodel.Rd plsRglm/man/plsR.Rd plsRglm/man/print.plsRmodel.Rd plsRglm/man/print.plsRglmmodel.Rd plsRglm/man/bootpls.Rd plsRglm/man/permcoefs.plsR.Rd plsRglm/man/coefs.plsR.Rd plsRglm/man/tilt.bootplsglm.Rd plsRglm/man/plot.table.summary.cv.plsRmodel.Rd plsRglm/man/CorMat.Rd plsRglm/man/kfolds2Chisqind.Rd plsRglm/man/aze.Rd plsRglm/man/coefs.plsRglm.Rd plsRglm/man/dicho.Rd
plsRglm/man/coefs.plsRnp.rd
plsRglm/man/aic.dof.Rd plsRglm/man/summary.cv.plsRmodel.Rd plsRglm/man/kfolds2Press.Rd plsRglm/man/simul_data_complete.Rd plsRglm/man/permcoefs.plsRnp.Rd

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