plsRglm: Partial Least Squares Regression for Generalized Linear Models
Version 1.1.1

Provides (weighted) Partial least squares Regression for generalized linear models and repeated k-fold cross-validation of such models using various criteria. It allows for missing data in the explanatory variables. Bootstrap confidence intervals constructions are also available.

Browse man pages Browse package API and functions Browse package files

AuthorFrederic Bertrand <frederic.bertrand@math.unistra.fr>, Nicolas Meyer <Nicolas.Meyer@nmeyer@unistra.fr>, Myriam Maumy-Bertrand <myriam.maumy-bertrand@math.unistra.fr>.
Date of publication2014-12-17 02:19:56
MaintainerFrederic Bertrand <frederic.bertrand@math.unistra.fr>
LicenseGPL-3
Version1.1.1
URL http://www-irma.u-strasbg.fr/~fbertran/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("plsRglm")

Man pages

aic.dof: Akaike and Bayesian Information Criteria and Generalized...
AICpls: AIC function for plsR models
aze: Microsatellites Dataset
aze_compl: As aze without missing values
bootpls: Non-parametric Bootstrap for PLS models
bootplsglm: Non-parametric Bootstrap for PLS generalized linear models
bordeaux: Quality of wine dataset
boxplots.bootpls: Boxplot bootstrap distributions
coef.plsRglmmodel: coef method for plsR models
coef.plsRmodel: coef method for plsR models
coefs.plsR: Coefficients for bootstrap computations of PLSR models
coefs.plsRglm: Coefficients for bootstrap computations of PLSGLR models
coefs.plsRglmnp: Coefficients for bootstrap computations of PLSGLR models
coefs.plsRnp: Coefficients for bootstrap computations of PLSR models
confints.bootpls: Bootstrap confidence intervals
CorMat: Correlation matrix for simulating plsR datasets
Cornell: Cornell dataset
cv.plsR: Partial least squares regression models with k-fold...
cv.plsRglm: Partial least squares regression glm models with k-fold cross...
cvtable: Table method for summary of cross validated PLSR and PLSGLR...
dicho: Dichotomization
fowlkes: Fowlkes dataset
infcrit.dof: Information criteria
kfolds2Chisq: Computes Predicted Chisquare for k-fold cross-validated...
kfolds2Chisqind: Computes individual Predicted Chisquare for k-fold cross...
kfolds2coeff: Extracts coefficients from k-fold cross validated partial...
kfolds2CVinfos_glm: Extracts and computes information criteria and fits...
kfolds2CVinfos_lm: Extracts and computes information criteria and fits...
kfolds2Mclassed: Number of missclassified individuals for k-fold cross...
kfolds2Mclassedind: Number of missclassified individuals per group for k-fold...
kfolds2Press: Computes PRESS for k-fold cross validated partial least...
kfolds2Pressind: Computes individual PRESS for k-fold cross validated partial...
loglikpls: loglikelihood function for plsR models
permcoefs.plsR: Coefficients for permutation bootstrap computations of PLSR...
permcoefs.plsRglm: Coefficients for permutation bootstrap computations of PLSGLR...
permcoefs.plsRglmnp: Coefficients for permutation bootstrap computations of PLSGLR...
permcoefs.plsRnp: Coefficients computation for permutation bootstrap
pine: Pine dataset
pine_full: Complete Pine dataset
pine_sup: Complete Pine dataset
plots.confints.bootpls: Plot bootstrap confidence intervals
plot.table.summary.cv.plsRglmmodel: Plot method for table of summary of cross validated plsRglm...
plot.table.summary.cv.plsRmodel: Plot method for table of summary of cross validated plsR...
PLS_glm_wvc: Light version of PLS\_glm for cross validation purposes
PLS_lm_wvc: Light version of PLS\_lm for cross validation purposes
plsR: Partial least squares Regression models with leave one out...
plsR.dof: Computation of the Degrees of Freedom
plsRglm: Partial least squares Regression generalized linear models
predict.plsRglmmodel: Print method for plsRcox models
predict.plsRmodel: Print method for plsRcox models
print.coef.plsRglmmodel: Print method for plsRglm models
print.coef.plsRmodel: Print method for plsR models
print.cv.plsRglmmodel: Print method for plsRglm models
print.cv.plsRmodel: Print method for plsR models
print.plsRglmmodel: Print method for plsRglm models
print.plsRmodel: Print method for plsR models
print.summary.plsRglmmodel: Print method for summaries of plsRglm models
print.summary.plsRmodel: Print method for summaries of plsR models
signpred: Graphical assessment of the stability of selected variables
simul_data_complete: Data generating detailed process for multivariate plsR models
simul_data_UniYX: Data generating function for univariate plsR models
simul_data_UniYX_binom: Data generating function for univariate binomial plsR models
simul_data_YX: Data generating function for multivariate plsR models
summary.cv.plsRglmmodel: Summary method for plsRglm models
summary.cv.plsRmodel: Summary method for plsR models
summary.plsRglmmodel: Summary method for plsRglm models
summary.plsRmodel: Summary method for plsR models
tilt.bootpls: Tilted bootstrap for PLS models
tilt.bootplsglm: Tilted bootstrap for PLS models
XbordeauxNA: Incomplete dataset for the quality of wine dataset
XpineNAX21: Incomplete dataset from the pine caterpillars example

Functions

AICpls Man page Source code
CorMat Man page
Cornell Man page
PLS_glm Man page Source code
PLS_glm_formula Man page Source code
PLS_glm_kfoldcv Man page Source code
PLS_glm_kfoldcv_formula Man page Source code
PLS_glm_wvc Man page Source code
PLS_lm Man page Source code
PLS_lm_formula Man page Source code
PLS_lm_kfoldcv Man page Source code
PLS_lm_kfoldcv_formula Man page Source code
PLS_lm_wvc Man page Source code
XbordeauxNA Man page
XpineNAX21 Man page
aic.dof Man page Source code
aze Man page
aze_compl Man page
bic.dof Man page Source code
bootpls Man page Source code
bootplsglm Man page Source code
bordeaux Man page
boxplots.bootpls Man page Source code
coef.plsRglmmodel Man page Source code
coef.plsRmodel Man page Source code
coefs.plsR Man page Source code
coefs.plsRglm Man page Source code
coefs.plsRglmnp Man page Source code
coefs.plsRnp Man page Source code
confints.bootpls Man page Source code
cv.plsR Man page Source code
cv.plsRglm Man page Source code
cv.plsRglmmodel.default Man page Source code
cv.plsRglmmodel.formula Man page Source code
cv.plsRmodel.default Man page Source code
cv.plsRmodel.formula Man page Source code
cvtable Man page Source code
cvtable.plsR Man page Source code
cvtable.plsRglm Man page Source code
dicho Man page Source code
fowlkes Man page
gmdl.dof Man page Source code
infcrit.dof Man page Source code
kfolds2CVinfos_glm Man page Source code
kfolds2CVinfos_lm Man page Source code
kfolds2Chisq Man page Source code
kfolds2Chisqind Man page Source code
kfolds2Mclassed Man page Source code
kfolds2Mclassedind Man page Source code
kfolds2Press Man page Source code
kfolds2Pressind Man page Source code
kfolds2coeff Man page Source code
loglikpls Man page Source code
permcoefs.plsR Man page Source code
permcoefs.plsRglm Man page Source code
permcoefs.plsRglmnp Man page Source code
permcoefs.plsRnp Man page Source code
pine Man page
pine_full Man page
pine_sup Man page
plot.coef.plsRmodel Source code
plot.table.summary.cv.plsRglmmodel Man page Source code
plot.table.summary.cv.plsRmodel Man page Source code
plots.confints.bootpls Man page Source code
plsR Man page Source code
plsR.dof Man page Source code
plsRglm Man page Source code
plsRglmmodel.default Man page Source code
plsRglmmodel.formula Man page Source code
plsRmodel.default Man page Source code
plsRmodel.formula Man page Source code
predict.plsRglmmodel Man page Source code
predict.plsRmodel Man page Source code
print.coef.plsRglmmodel Man page Source code
print.coef.plsRmodel Man page Source code
print.cv.plsRglmmodel Man page Source code
print.cv.plsRmodel Man page Source code
print.plsRglmmodel Man page Source code
print.plsRmodel Man page Source code
print.summary.plsRglmmodel Man page Source code
print.summary.plsRmodel Man page Source code
signpred Man page Source code
simul_data_UniYX Man page Source code
simul_data_UniYX_binom Man page Source code
simul_data_YX Man page Source code
simul_data_complete Man page Source code
summary.cv.plsRglmmodel Man page Source code
summary.cv.plsRmodel Man page Source code
summary.plsRglmmodel Man page Source code
summary.plsRmodel Man page Source code
tilt.bootpls Man page Source code
tilt.bootplsglm Man page Source code

Files

inst
inst/CITATION
inst/doc
inst/doc/plsRglm.pdf
inst/doc/plsRglm-manual.pdf.asis
inst/doc/plsRglm.pdf.asis
inst/doc/plsRglm-manual.pdf
NAMESPACE
demo
demo/pls_glm_family.R
demo/pls.R
demo/pls_formula.R
demo/pls_glm_logistic.R
demo/00Index
demo/pls_glm_polr.R
NEWS
data
data/CorMat.RData
data/pine_sup.RData
data/aze.RData
data/fowlkes.RData
data/XbordeauxNA.RData
data/Cornell.RData
data/pine.RData
data/pine_full.RData
data/aze_compl.RData
data/XpineNAX21.RData
data/bordeaux.RData
R
R/print.cv.plsRmodel.R
R/loglikpls.R
R/plsRglmmodel.formula.R
R/simul_data_UniYX_binom.R
R/kfolds2CVinfos_lm.R
R/plsRglm.R
R/plsRmodel.formula.R
R/permcoefs.plsRglmnp.R
R/PLS_lm.R
R/PLS_lm_formula.R
R/coefs.plsRnp.r
R/plot.table.summary.cv.plsRglmmodel.R
R/plot.table.summary.cv.plsRmodel.R
R/permcoefs.plsRglm.R
R/AICpls.R
R/predict.plsRmodel.R
R/cvtable.plsRglm.R
R/cv.plsRglmmodel.formula.R
R/coefs.plsRglm.R
R/PLS_glm_wvc.R
R/print.coef.plsRmodel.R
R/kfolds2Mclassedind.R
R/summary.cv.plsRmodel.R
R/bic.dof.R
R/plsRglmmodel.default.R
R/kfolds2CVinfos_glm.R
R/print.plsRmodel.R
R/PLS_lm_kfoldcv_formula.R
R/cv.plsR.R
R/kfolds2Chisqind.R
R/cvtable.R
R/boxplots.bootpls.R
R/kfolds2Mclassed.R
R/print.cv.plsRglmmodel.R
R/kfolds2Pressind.R
R/plsRmodel.default.R
R/plots.confints.bootpls.R
R/kfolds2Chisq.R
R/PLS_glm_formula.R
R/coefs.plsR.R
R/print.coef.plsRglmmodel.R
R/cv.plsRglmmodel.default.R
R/simul_data_UniYX.R
R/gmdl.dof.R
R/coefs.plsRglmnp.R
R/print.summary.plsRglmmodel.R
R/plsR.R
R/print.summary.plsRmodel.R
R/PLS_lm_wvc.R
R/coef.plsRglmmodel.R
R/tilt.bootplsglm.R
R/predict.plsRglmmodel.R
R/coef.plsRmodel.R
R/bootplsglm.R
R/cv.plsRmodel.default.R
R/confints.bootpls.R
R/cv.plsRglm.R
R/PLS_glm_kfoldcv.R
R/dicho.R
R/PLS_lm_kfoldcv.R
R/infcrit.dof.R
R/cv.plsRmodel.formula.R
R/PLS_glm.R
R/summary.plsRglmmodel.R
R/permcoefs.plsR.R
R/PLS_glm_kfoldcv_formula.R
R/kfolds2coeff.R
R/simul_data_YX.R
R/summary.cv.plsRglmmodel.R
R/permcoefs.plsRnp.R
R/print.plsRglmmodel.R
R/signpred.R
R/bootpls.R
R/summary.plsRmodel.R
R/simul_data_complete.R
R/cvtable.plsR.R
R/kfolds2Press.R
R/plot.coef.plsRmodel.R
R/plsR.dof.R
R/tilt.bootpls.R
R/aic.dof.R
vignettes
vignettes/plsRglm-manual.pdf.asis
vignettes/plsRglm.pdf.asis
MD5
build
build/vignette.rds
DESCRIPTION
man
man/coefs.plsRglmnp.Rd
man/summary.cv.plsRglmmodel.Rd
man/confints.bootpls.Rd
man/permcoefs.plsRglmnp.Rd
man/tilt.bootpls.Rd
man/pine_sup.Rd
man/plsR.dof.Rd
man/plots.confints.bootpls.Rd
man/print.coef.plsRglmmodel.Rd
man/kfolds2Mclassed.Rd
man/pine_full.Rd
man/coef.plsRglmmodel.Rd
man/kfolds2CVinfos_glm.Rd
man/coef.plsRmodel.Rd
man/predict.plsRglmmodel.Rd
man/print.cv.plsRmodel.Rd
man/aze_compl.Rd
man/PLS_lm_wvc.Rd
man/permcoefs.plsRglm.Rd
man/kfolds2Pressind.Rd
man/simul_data_UniYX_binom.Rd
man/simul_data_YX.Rd
man/kfolds2Chisq.Rd
man/XbordeauxNA.Rd
man/boxplots.bootpls.Rd
man/simul_data_UniYX.Rd
man/summary.plsRglmmodel.Rd
man/print.summary.plsRglmmodel.Rd
man/print.cv.plsRglmmodel.Rd
man/XpineNAX21.Rd
man/bootplsglm.Rd
man/print.coef.plsRmodel.Rd
man/PLS_glm_wvc.Rd
man/pine.Rd
man/plot.table.summary.cv.plsRglmmodel.Rd
man/kfolds2Mclassedind.Rd
man/signpred.Rd
man/cvtable.Rd
man/cv.plsR.Rd
man/kfolds2coeff.Rd
man/summary.plsRmodel.Rd
man/kfolds2CVinfos_lm.Rd
man/bordeaux.Rd
man/predict.plsRmodel.Rd
man/plsRglm.Rd
man/infcrit.dof.Rd
man/Cornell.Rd
man/cv.plsRglm.Rd
man/AICpls.Rd
man/fowlkes.Rd
man/loglikpls.Rd
man/print.summary.plsRmodel.Rd
man/plsR.Rd
man/print.plsRmodel.Rd
man/print.plsRglmmodel.Rd
man/bootpls.Rd
man/permcoefs.plsR.Rd
man/coefs.plsR.Rd
man/tilt.bootplsglm.Rd
man/plot.table.summary.cv.plsRmodel.Rd
man/CorMat.Rd
man/kfolds2Chisqind.Rd
man/aze.Rd
man/coefs.plsRglm.Rd
man/dicho.Rd
man/coefs.plsRnp.rd
man/aic.dof.Rd
man/summary.cv.plsRmodel.Rd
man/kfolds2Press.Rd
man/simul_data_complete.Rd
man/permcoefs.plsRnp.Rd
plsRglm documentation built on May 19, 2017, 7:50 p.m.