Nothing
context("plot_pxg")
test_that("plot_pxg works", {
skip_if(isnt_karl(), "plot tests only run locally")
iron <- read_cross2(system.file("extdata", "iron.zip", package="qtl2"))
map <- insert_pseudomarkers(iron$gmap, step=1)
probs <- calc_genoprob(iron, map, error_prob=0.002)
set.seed(62610474)
geno <- maxmarg(probs, map, chr=16, pos=28.6, return_char=TRUE)
test_plot_pxg <- function() plot_pxg(geno, log10(iron$pheno[,1]), ylab="log liver")
expect_doppelganger("plot_pxg", test_plot_pxg)
test_plot_pxg_se <- function() plot_pxg(geno, log10(iron$pheno[,1]), ylab="log liver", SEmult=2)
expect_doppelganger("plot_pxg_se", test_plot_pxg_se)
})
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