API for rSHAPE
Simulated Haploid Asexual Population Evolution
| Global functions | |
|---|---|
| addDrift | Man page Source code |
| addQuotes | Man page Source code |
| adjustBirths | Man page Source code |
| birthFunction | Man page Source code |
| buildPedigree | Man page Source code |
| calc_relativeFitness | Man page Source code |
| compute_distGrowth | Man page Source code |
| createGenotypes | Man page Source code |
| create_genotypeFrame | Man page Source code |
| deathFunction | Man page Source code |
| defineNeighbours | Man page Source code |
| defineSHAPE | Man page Source code |
| expGrowth | Man page Source code |
| extractInfo_focalID | Man page Source code |
| extract_popDemographics | Man page Source code |
| findParent | Man page Source code |
| find_neededNeighbours | Man page Source code |
| fitnessDist | Man page Source code |
| fitnessLandscape | Man page Source code |
| growthFunction | Man page Source code |
| logisticGrowth | Man page Source code |
| logisticMap | Man page Source code |
| lossSampling | Man page Source code |
| mutationFunction | Man page Source code |
| nameEnviron | Man page Source code |
| nameObject | Man page Source code |
| nameTable | Man page Source code |
| nameTable_neighbourhood | Man page Source code |
| nameTable_step | Man page Source code |
| name_batchString | Man page Source code |
| name_batchSubmit | Man page Source code |
| name_bodyScript | Man page Source code |
| name_parameterScript | Man page Source code |
| name_subScript | Man page Source code |
| querryEstablished | Man page Source code |
| reportPopulations | Man page Source code |
| reset_shapeDB | Man page Source code |
| retrieve_binaryString | Man page Source code |
| runProcessing | Man page Source code |
| runReplicate | Man page Source code |
| runSHAPE | Man page Source code |
| set_DepbySite_ancestFitness | Man page Source code |
| set_RMF_indWeight | Man page Source code |
| set_const_NK_interactionsMat | Man page Source code |
| set_const_RMF_globalOptima | Man page Source code |
| set_siteByState_fitnessMat | Man page Source code |
| shapeCombinations | Man page Source code |
| shapeExperiment | Man page Source code |
| stopError | Man page Source code |
| summariseExperiment | Man page Source code |
| summarise_evolRepeatability | Man page Source code |
| summarise_experimentFiles | Man page Source code |
| summarise_experimentParameters | Man page Source code |
| summarise_popDemographics | Man page Source code |
| trimQuotes | Man page Source code |
| updateLines | Man page Source code |
| writeParameters | Man page Source code |
| write_subScript | Man page Source code |
