Files in rehh
Searching for Footprints of Selection using 'Extended Haplotype Homozygosity' Based Tests
MD5
NEWS.md
NAMESPACE
DESCRIPTION
R/data2haplohh.R
R/calc_ehhs.R
R/scan_hh.R
R/manhattanplot.R
R/make.example.files.R
R/rehh.R
R/haplohh-class.R
R/freqbinplot.R
R/extract_regions.R
R/calc_haplen.R
R/calc_sfs_tests.R
R/distribplot.R
R/plot.haplen.R
R/calc_pairwise_haplen.R
R/plot.ehh.R
R/plot.furcation.R
R/scan_hh_full.R
R/haplohh2sweepfinder.R
R/plot.ehhs.R
R/ihh2ihs.R
R/as.newick.R
R/calc_region_stats.R
R/update_haplohh.R
R/calc_furcation.R
R/plot.haplohh.R
R/furcation-class.R
R/calc_candidate_regions.R
R/subset.haplohh.R
R/ines2rsb.R
R/calc_ehh.R
R/ies2xpehh.R
src/calc_sfs_tests.h
src/calc_ehh.c
src/Makevars
src/CALL_PAIRWISE_HAPLEN.c
src/haplotypes.c
src/calc_pairwise_haplen.h
src/asnewick.h
src/calc_ehhs.h
src/CALL_SCAN_HH_FULL.c
src/definitions.h
src/calc_sfs_tests.c
src/asnewick.c
src/haplotypes_with_lengths.h
src/CALL_SCAN_HH.c
src/CALL_EHHS.c
src/sfs_moments.h
src/haplotypes_with_nodes.h
src/CALL_SFS_TESTS.c
src/calc_furcation.h
src/calc_pairwise_haplen.c
src/init.c
src/integrate.h
src/haplotypes.h
src/integrate.c
src/CALL_INTEGRAL.c
src/haplotypes_with_nodes.c
src/homozygosity.h
src/calc_ehhs.c
src/sfs_moments.c
src/CALL_EHH.c
src/calc_furcation.c
src/haplotypes_with_lengths.c
src/CALL_FURCATION.c
src/CALL_ASNEWICK.c
src/calc_ehh.h
src/homozygosity.c
inst/CITATION
inst/doc/examples.Rmd
inst/doc/rehh.R
inst/doc/examples.html
inst/doc/rehh.html
inst/doc/rehh.Rmd
inst/doc/examples.R
inst/extdata/example_neutral.vcf
inst/extdata/example_sweep_with_recombination.vcf
inst/extdata/example1.hap
inst/extdata/example2.hap
inst/extdata/example1.map
inst/extdata/example2.map
inst/extdata/example2.vcf
inst/extdata/example_sweep.vcf
inst/extdata/bta12_cgu.vcf.gz
inst/extdata/example1.vcf
inst/extdata/ms.out
build/vignette.rds
tests/testthat.R
tests/testthat/test_sfs_tests.R
tests/testthat/teardown.R
tests/testthat/test_data2haplohh.R
tests/testthat/serialized_furcation_example2_rs6_unphased.txt
tests/testthat/test_examples.R
tests/testthat/test_scan_hh.R
tests/testthat/furcation_F1205400.newick
tests/testthat/test_ihh2ihs.R
tests/testthat/test_error_messages.R
tests/testthat/test_furcation.R
tests/testthat/serialized_furcation_example2_rs6_phased.txt
tests/testthat/test_calc_candidate_regions.R
tests/testthat/test_scan_full.R
tests/testthat/serialized_furcation_F1205400.txt
tests/testthat/setup.R
vignettes/examples.Rmd
vignettes/rehh.Rmd
vignettes/genetics.csl
vignettes/vignette.bib
data/datalist
data/haplohh_cgu_bta12.RData
man/calc_candidate_regions.Rd
man/calc_ehh.Rd
man/furcation-class.Rd
man/ftree-class.Rd
man/calc_ehhs.Rd
man/haplohh2sweepfinder.Rd
man/ihh2ihs.Rd
man/freqbinplot.Rd
man/scan_hh.Rd
man/scan_hh_full.Rd
man/make.example.files.Rd
man/manhattanplot.Rd
man/remove.example.files.Rd
man/plot.furcation.Rd
man/plot.haplohh.Rd
man/ines2rsb.Rd
man/distribplot.Rd
man/ies2xpehh.Rd
man/haplen-class.Rd
man/allelefurcation-class.Rd
man/subset.haplohh.Rd
man/extract_regions.Rd
man/calc_pairwise_haplen.Rd
man/haplohh-class.Rd
man/calc_region_stats.Rd
man/data2haplohh.Rd
man/plot.ehh.Rd
man/calc_furcation.Rd
man/calc_sfs_tests.Rd
man/update_haplohh.Rd
man/as.newick.Rd
man/plot.haplen.Rd
man/calc_haplen.Rd
man/rehh-package.Rd
man/haplohh_cgu_bta12.Rd
man/plot.ehhs.Rd
