R/rehh.R

In rehh: Searching for Footprints of Selection using 'Extended Haplotype Homozygosity' Based Tests

#'@details 
#'See \code{vignette("rehh", package = "rehh")} for an overview of the package and
#'\code{vignette("examples", package = "rehh")} for a more detailed discussion of two small example
#'data sets.
#'@references Gautier, M. and Naves, M. (2011). Footprints of selection in the ancestral admixture of a New World Creole cattle breed. \emph{Molecular Ecology}, \strong{20}, 3128-3143.
#'
#'Gautier M. and Vitalis R. (2012). rehh: An R package to detect footprints of selection in
#'genome-wide SNP data from haplotype structure. \emph{Bioinformatics}, \strong{28}(8), 1176-1177.
#'
#'Gautier M., Klassmann A., and Vitalis R. (2017). rehh 2.0: a reimplementation of the R package
#'rehh to detect positive selection from haplotype structure. \emph{Molecular Ecology Resources}, \strong{17}, 78-90.
#'
#'Klassmann, A. and Gautier, M. (2020). Detecting selection using Extended Haplotype
#'Homozygosity-based statistics on unphased or unpolarized data (preprint). 
#'https://doi.org/10.22541/au.160405572.29972398/v1
#'
#'Sabeti, P.C. et al. (2002). Detecting recent positive selection in the human genome from haplotype structure. \emph{Nature}, \strong{419}, 832-837.
#'
#'Sabeti, P.C. et al. (2007). Genome-wide detection and characterization of positive selection in human populations. \emph{Nature}, \strong{449}, 913-918.
#'
#'Tang, K. and Thornton, K.R. and Stoneking, M. (2007). A New Approach for Using Genome Scans to Detect Recent Positive Selection in the Human Genome. \emph{Plos Biology}, \strong{7}, e171.
#'
#'Voight, B.F. and Kudaravalli, S. and Wen, X. and Pritchard, J.K. (2006). A map of recent positive selection in the human genome. \emph{Plos Biology}, \strong{4}, e72.
#'@useDynLib rehh, .registration = TRUE
"_PACKAGE"