rstan
R Interface to Stan

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API for rstan
R Interface to Stan

Global functions
.ac_fun Source code
.ac_plot_data Source code
.ac_plot_data_multi Source code
.add_aesthetics Source code
.check_object Source code
.get_stan_params Source code
.get_stanreg_parnames Source code
.make_plot_data Source code
.max_td Source code
.mode_check Source code
.nuts_args_check Source code
.nuts_return Source code
.onAttach Source code
.onLoad Source code
.onUnload Source code
.p_hist Source code
.remove_udiag_pars Source code
.reshape_df Source code
.reshape_sample Source code
.rhat_neff_mcse_hist Source code
.sampler_param_df Source code
.sampler_param_vs_param Source code
.sampler_param_vs_sampler_param_violin Source code
.sampler_params_post_warmup Source code
.treedepth_ndivergent_hist Source code
.upars Source code
.vb_check Source code
.warn_march_makevars Source code
As.mcmc.list Man page Source code
OUT Man page
PKG_CPPFLAGS_env_fun Source code
RNG Man page
Rhat Man page Source code
[.simsummary Man page
`%ifNULL%` Source code
`names<-.stanfit` Source code
all_int_eq Source code
append_id Source code
as.array.stanfit Man page Source code
as.data.frame.stanfit Man page Source code
as.matrix.stanfit Man page Source code
as.mcmc.list.stanfit Source code
autocorrelation Source code
autocovariance Source code
avoid_crash Source code
boost_path_fun Source code
boost_path_fun2 Source code
boost_url Source code
calc_starts Source code
check_args Source code
check_divergences Man page Source code
check_energy Man page Source code
check_hmc_diagnostics Man page Source code
check_pars Source code
check_pars_first Source code
check_pars_second Source code
check_seed Source code
check_treedepth Man page Source code
color_vector Source code
color_vector_chain Source code
combine_msd_quan Source code
config_argss Source code
constrain_pars Man page
constrain_pars,ANY-method Man page
constrain_pars,stanfit-method Man page
conv_quantile Source code
cpp_object_initializer Man page
create_progress_html_file Source code
create_skeleton Source code
cxxdso-class Man page
cxxfun_from_dll Source code
cxxfun_from_dso_bin Source code
cxxfunctionplus Source code
data_list2array Source code
data_preprocess Source code
default_summary_probs Source code
delete_stan_demo_folder Source code
dim.stanfit Man page Source code
dimnames.stanfit Man page Source code
doctor_cppcode Source code
dotfnames_to_sqrfnames Source code
dso_path Source code
eigen_path_fun Source code
ess_bulk Man page Source code
ess_mean Source code
ess_quantile Source code
ess_rfun Source code
ess_sd Source code
ess_tail Man page Source code
exposeStanClass Source code
expose_stan_functions Man page Source code
expose_stan_functions_hacks Source code
extract Man page
extract,stanfit-method Man page
extract_sparse_parts Man page Source code
fft_next_good_size Source code
filename_ext Source code
filename_rm_ext Source code
flat_one_par Source code
flatnames Source code
get_CXX Source code
get_Rcpp_module_def_code Source code
get_adaptation_info Man page
get_adaptation_info,ANY-method Man page
get_adaptation_info,stanfit-method Man page
get_all_makefile_paths Source code
get_bfmi Man page Source code
get_cppcode Man page
get_cppcode,ANY-method Man page
get_cppcode,stanmodel-method Man page
get_cppo_mode Man page
get_cppo_mode,stanfit-method Man page
get_cxxflags Man page
get_cxxflags,stanmodel-method Man page
get_cxxo_level Source code
get_dims_from_fnames Source code
get_divergent_iterations Man page Source code
get_elapsed_time Man page
get_elapsed_time,ANY-method Man page
get_elapsed_time,stanfit-method Man page
get_inits Man page
get_inits,stanfit-method Man page
get_kept_samples Source code
get_kept_samples2 Source code
get_logposterior Man page
get_logposterior,ANY-method Man page
get_logposterior,stanfit-method Man page
get_low_bfmi_chains Man page Source code
get_makefile_flags Source code
get_makefile_txt Source code
get_max_treedepth_iterations Man page Source code
get_model_strcode Source code
get_num_divergent Man page Source code
get_num_leapfrog_per_iteration Man page Source code
get_num_max_treedepth Man page Source code
get_num_upars Man page
get_num_upars,ANY-method Man page
get_num_upars,stanfit-method Man page
get_par_summary Source code
get_par_summary_msd Source code
get_par_summary_quantile Source code
get_posterior_mean Man page
get_posterior_mean,ANY-method Man page
get_posterior_mean,stanfit-method Man page
get_rhat_cols Source code
get_rng Man page Source code
get_sampler_params Man page
get_sampler_params,ANY-method Man page
get_sampler_params,stanfit,logical-method Man page
get_samples Source code
get_samples2 Source code
get_seed Man page
get_seed,stanfit-method Man page
get_seeds Man page
get_seeds,stanfit-method Man page
get_stan_param_names Source code
get_stancode Man page
get_stancode,stanfit-method Man page
get_stancode,stanmodel-method Man page
get_stanmodel Man page
get_stanmodel,stanfit-method Man page
get_stream Man page Source code
get_time_from_csv Source code
get_treedepth_threshold Source code
gqs Man page
gqs,stanmodel-method Man page
gqs_light Source code
grab_cxxfun,cxxdso-method Man page
grad_log_prob Man page
grad_log_prob,ANY-method Man page
grad_log_prob,stanfit-method Man page
idx_col2rowm Source code
idx_row2colm Source code
if_debug_defined Source code
if_ndebug_defined Source code
inc_path_fun Source code
init_rstan_opt_env Source code
inlineCxxPlugin Source code
is.array.stanfit Man page Source code
is.sparc Source code
is.stanfit Source code
is.stanreg Source code
is_arg_deprecated Source code
is_arg_recognizable Source code
is_constant Source code
is_dir_writable Source code
is_dso_loaded,cxxdso-method Man page
is_legal_stan_vname Source code
is_named_list Source code
is_null_cxxfun Source code
is_null_ptr Source code
is_sf_valid Source code
is_sfinstance_valid Source code
is_sm_valid Source code
last_makefile Source code
legitimate_model_name Source code
legitimate_space_in_path Source code
list_as_integer_if_doable Source code
log_lik_i_stanfit Source code
log_lik_i_upars_stanfit Source code
log_prob Man page
log_prob,ANY-method Man page
log_prob,stanfit-method Man page
log_prob_upars_stanfit Source code
log_sum_exp Source code
loo Man page
loo,stanfit-method Man page
loo.stanfit Man page Source code
loo_moment_match Man page
loo_moment_match,stanfit-method Man page
loo_moment_match.stanfit Man page Source code
lookup Man page Source code
makeconf_path Man page Source code
makevars_user Source code
mcse_mean Source code
mcse_quantile Source code
mcse_sd Source code
mk_cppmodule Source code
mklist Source code
monitor Man page Source code
multi_idx_row2colm Source code
names.stanfit Man page Source code
names<-.stanfit Man page
new_empty_stanfit Source code
nlist Man page
num_pars Source code
obj_size_str Source code
optimizing Man page
optimizing,stanmodel-method Man page
pairs.stanfit Man page
par_traceplot Source code
paridx_fun Source code
pars_total_indexes Source code
parse_data Source code
parse_stancsv_comments Source code
plot,stanfit,missing-method Man page
plot,stanfit-method Man page
plot.sbc Man page Source code
plot_rhat_legend Source code
post_draws_stanfit Source code
prep_call_sampler Source code
print.sbc Man page Source code
print.simsummary Man page Source code
print.stanfit Man page Source code
quietgg Man page Source code
r_scale Source code
read_comments Source code
read_csv_header Source code
read_dso Source code
read_model_from_con Source code
read_one_stan_csv Source code
read_rdump Man page Source code
read_stan_csv Man page Source code
real_is_integer Source code
remove_empty_pars Source code
rhat_rfun Source code
rm_last_makefile Source code
rm_rstan_makefile_flags Source code
rstan Man page
rstan-internal Man page
rstan-package Man page
rstan-plotting-functions Man page
rstan.package.skeleton Man page Source code
rstan_ess Source code
rstan_ess2_cpp Source code
rstan_gg_options Man page Source code
rstan_ggtheme_options Man page Source code
rstan_options Man page Source code
rstan_relist Source code
rstan_seq_perm Source code
rstan_splitrhat Source code
rstan_splitrhat2_cpp Source code
rstanplugin Source code
rstanvis_aes_ops Source code
rstanvis_hist_theme Source code
rstanvis_multiparam_theme Source code
rstanvis_theme Source code
rstudio_stanc Source code
sample_indices Source code
sampler_param_matrix Source code
sampler_param_vector Source code
sampling Man page
sampling,stanmodel-method Man page Man page
sbc Man page Source code
sbcFitFile Source code
seq_array_ind Source code
set_cppo Man page Source code
set_makefile_flags Source code
set_rstan_ggplot_defaults Source code
sflist2stanfit Man page Source code
should_return_NA Source code
show,cxxdso-method Man page
show,stanfit-method Man page
show,stanmodel-method Man page
split_chains Source code
sqrfnames_to_dotfnames Source code
stan Man page Source code
stan_ac Man page Source code
stan_demo Man page Source code
stan_dens Man page Source code
stan_diag Man page Source code
stan_divergence Source code
stan_ess Man page Source code
stan_hist Man page Source code
stan_mcse Man page Source code
stan_model Man page Source code
stan_par Man page Source code
stan_plot Man page Source code
stan_plot_inferences Source code
stan_rdump Man page Source code
stan_rhat Man page Source code
stan_sample Source code
stan_scat Man page Source code
stan_stepsize Source code
stan_trace Man page Source code
stan_treedepth Source code
stan_version Man page Source code
stanc Man page Source code
stanc_builder Man page Source code
stanc_process Source code
stanfit Man page
stanfit-class Man page
stanmodel-class Man page
summary,stanfit-method Man page
summary_sim Source code
summary_sim_ess Source code
summary_sim_quan Source code
summary_sim_rhat Source code
system_info Source code
test_221 Source code
throw_sampler_warnings Source code
traceplot Man page
traceplot,stanfit-method Man page
u_scale Source code
unconstrain_pars Man page
unconstrain_pars,ANY-method Man page
unconstrain_pars,stanfit-method Man page
unconstrain_pars_stanfit Source code
unique_par Source code
vb Man page
vb,stanmodel-method Man page
writable_sample_file Source code
z_scale Source code
rstan documentation built on April 12, 2025, 1:33 a.m.

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