API for rstan
R Interface to Stan

Global functions
As.mcmc.list Man page Source code
OUT Man page
PKG_CPPFLAGS_env_fun Source code
RNG Man page
ac_fun Source code
ac_plot_data Source code
ac_plot_data_multi Source code
add_aesthetics Source code
all_int_eq Source code
append_id Source code
as.array.stanfit Man page Source code
as.data.frame.stanfit Man page Source code
as.matrix.stanfit Man page Source code
as.mcmc.list.stanfit Source code
autocorrelation Source code
autocovariance Source code
avoid_crash Source code
boost_path_fun Source code
boost_path_fun2 Source code
boost_url Source code
calc_starts Source code
check_args Source code
check_divergences Man page Source code
check_energy Man page Source code
check_hmc_diagnostics Man page Source code
check_object Source code
check_pars Source code
check_pars_first Source code
check_pars_second Source code
check_seed Source code
check_treedepth Man page Source code
color_vector Source code
color_vector_chain Source code
combine_msd_quan Source code
config_argss Source code
constrain_pars Man page
constrain_pars,ANY-method Man page
constrain_pars,stanfit-method Man page
cpp_object_initializer Man page
create_progress_html_file Source code
create_skeleton Source code
cxxdso-class Man page
cxxfun_from_dll Source code
cxxfun_from_dso_bin Source code
cxxfunctionplus Source code
data_list2array Source code
data_preprocess Source code
default_summary_probs Source code
delete_stan_demo_folder Source code
dim.stanfit Man page Source code
dimnames.stanfit Man page Source code
dotfnames_to_sqrfnames Source code
dso_path Source code
dynGet Source code
eigen_path_fun Source code
ess_rfun Source code
expose_stan_functions Man page Source code
expose_stan_functions_hacks Source code
extract Man page
extract,stanfit-method Man page
extract_sparse_parts Man page Source code
fft_next_good_size Source code
filename_ext Source code
filename_rm_ext Source code
flat_one_par Source code
flatnames Source code
get_CXX Source code
get_Rcpp_module_def_code Source code
get_adaptation_info Man page
get_adaptation_info,ANY-method Man page
get_adaptation_info,stanfit-method Man page
get_bfmi Man page Source code
get_cppcode Man page
get_cppcode,ANY-method Man page
get_cppcode,stanmodel-method Man page
get_cppo_mode Man page
get_cppo_mode,stanfit-method Man page
get_cxxflags Man page
get_cxxflags,stanmodel-method Man page
get_cxxo_level Source code
get_dims_from_fnames Source code
get_divergent_iterations Man page Source code
get_elapsed_time Man page
get_elapsed_time,ANY-method Man page
get_elapsed_time,stanfit-method Man page
get_inits Man page
get_inits,stanfit-method Man page
get_kept_samples Source code
get_kept_samples2 Source code
get_logposterior Man page
get_logposterior,ANY-method Man page
get_logposterior,stanfit-method Man page
get_low_bfmi_chains Man page Source code
get_makefile_flags Source code
get_makefile_txt Source code
get_max_treedepth_iterations Man page Source code
get_model_strcode Source code
get_num_divergent Man page Source code
get_num_leapfrog_per_iteration Man page Source code
get_num_max_treedepth Man page Source code
get_num_upars Man page
get_num_upars,ANY-method Man page
get_num_upars,stanfit-method Man page
get_par_summary Source code
get_par_summary_msd Source code
get_par_summary_quantile Source code
get_posterior_mean Man page
get_posterior_mean,ANY-method Man page
get_posterior_mean,stanfit-method Man page
get_rhat_cols Source code
get_rng Man page Source code
get_sampler_params Man page
get_sampler_params,ANY-method Man page
get_sampler_params,stanfit,logical-method Man page
get_samples Source code
get_samples2 Source code
get_seed Man page
get_seed,stanfit-method Man page
get_seeds Man page
get_seeds,stanfit-method Man page
get_stan_param_names Source code
get_stan_params Source code
get_stancode Man page
get_stancode,stanfit-method Man page
get_stanmodel Man page
get_stanmodel,stanfit-method Man page
get_stanreg_parnames Source code
get_stream Man page Source code
get_time_from_csv Source code
get_treedepth_threshold Source code
git_head Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code
grab_cxxfun,cxxdso-method Man page
grad_log_prob Man page
grad_log_prob,ANY-method Man page
grad_log_prob,stanfit-method Man page
idx_col2rowm Source code
idx_row2colm Source code
if_debug_defined Source code
if_ndebug_defined Source code
inc_path_fun Source code
init_rstan_opt_env Source code
inlineCxxPlugin Source code
is.array.stanfit Man page Source code
is.sparc Source code
is.stanfit Source code
is.stanreg Source code
is_arg_deprecated Source code
is_arg_recognizable Source code
is_dir_writable Source code
is_dso_loaded,cxxdso-method Man page
is_legal_stan_vname Source code
is_named_list Source code
is_null_cxxfun Source code
is_null_ptr Source code
is_sf_valid Source code
is_sfinstance_valid Source code
is_sm_valid Source code
last_makefile Source code
legitimate_model_name Source code
legitimate_space_in_path Source code
list_as_integer_if_doable Source code
log_prob Man page
log_prob,ANY-method Man page
log_prob,stanfit-method Man page
loo Man page
loo,stanfit-method Man page
loo.stanfit Man page Source code
lookup Man page Source code
make_plot_data Source code
makeconf_path Man page Source code
max_td Source code
mk_cppmodule Source code
mklist Source code
mode_check Source code
monitor Man page Source code
multi_idx_row2colm Source code
names.stanfit Man page Source code
names<-.stanfit Man page
new_empty_stanfit Source code
num_pars Source code
nuts_args_check Source code
nuts_return Source code
obj_size_str Source code
onAttach Source code
onLoad Source code
optimizing Man page
optimizing,stanmodel-method Man page
p_hist Source code
pairs.stanfit Man page Source code
par_traceplot Source code
paridx_fun Source code
pars_total_indexes Source code
parse_data Source code
parse_stancsv_comments Source code
plot,stanfit,missing-method Man page
plot,stanfit-method Man page
plot_rhat_legend Source code
prep_call_sampler Source code
print.stanfit Man page Source code
quietgg Man page Source code
read_comments Source code
read_csv_header Source code
read_dso Source code
read_model_from_con Source code
read_one_stan_csv Source code
read_rdump Man page Source code
read_stan_csv Man page Source code
real_is_integer Source code
remove_empty_pars Source code
remove_udiag_pars Source code
reshape_df Source code
reshape_sample Source code
rhat_neff_mcse_hist Source code
rm_last_makefile Source code
rm_rstan_makefile_flags Source code
rstan Man page
rstan-internal Man page
rstan-package Man page
rstan-plotting-functions Man page
rstan.package.skeleton Man page Source code
rstan_ess Source code
rstan_ess2_cpp Source code
rstan_gg_options Man page Source code
rstan_ggtheme_options Man page Source code
rstan_options Man page Source code
rstan_relist Source code
rstan_seq_perm Source code
rstan_splitrhat Source code
rstan_splitrhat2_cpp Source code
rstanplugin Source code
rstudio_stanc Source code
sampler_param_df Source code
sampler_param_matrix Source code
sampler_param_vector Source code
sampler_param_vs_param Source code
sampler_param_vs_sampler_param_violin Source code
sampler_params_post_warmup Source code
sampling Man page
sampling,stanmodel-method Man page Man page
seq_array_ind Source code
set_cppo Man page Source code
set_makefile_flags Source code
sflist2stanfit Man page Source code
show,cxxdso-method Man page
show,stanfit-method Man page
show,stanmodel-method Man page
split_rhat_rfun Source code
sqrfnames_to_dotfnames Source code
stan Man page Source code
stan_ac Man page Source code
stan_demo Man page Source code
stan_dens Man page Source code
stan_diag Man page Source code
stan_divergence Source code
stan_ess Man page Source code
stan_hist Man page Source code
stan_mcse Man page Source code
stan_model Man page Source code
stan_par Man page Source code
stan_plot Man page Source code
stan_plot_inferences Source code
stan_rdump Man page Source code
stan_rhat Man page Source code
stan_sample Source code
stan_scat Man page Source code
stan_stepsize Source code
stan_trace Man page Source code
stan_treedepth Source code
stan_version Man page Source code
stanc Man page Source code
stanc_builder Man page Source code
stanfit Man page
stanfit-class Man page
stanmodel-class Man page
summary,stanfit-method Man page
summary_sim Source code
summary_sim_ess Source code
summary_sim_quan Source code
summary_sim_rhat Source code
system_info Source code
throw_sampler_warnings Source code
traceplot Man page
traceplot,stanfit-method Man page
treedepth_ndivergent_hist Source code
unconstrain_pars Man page
unconstrain_pars,ANY-method Man page
unconstrain_pars,stanfit-method Man page
unique_par Source code
upars Source code
vb Man page
vb,stanmodel-method Man page
vb_check Source code
writable_sample_file Source code
rstan documentation built on Oct. 16, 2018, 9:04 a.m.