API for rstan
R Interface to Stan

Global functions
.ac_fun Source code
.ac_plot_data Source code
.ac_plot_data_multi Source code
.add_aesthetics Source code
.check_object Source code
.get_stan_params Source code
.get_stanreg_parnames Source code
.make_plot_data Source code
.max_td Source code
.mode_check Source code
.nuts_args_check Source code
.nuts_return Source code
.onAttach Source code
.onLoad Source code
.onUnload Source code
.p_hist Source code
.remove_udiag_pars Source code
.reshape_df Source code
.reshape_sample Source code
.rhat_neff_mcse_hist Source code
.sampler_param_df Source code
.sampler_param_vs_param Source code
.sampler_param_vs_sampler_param_violin Source code
.sampler_params_post_warmup Source code
.treedepth_ndivergent_hist Source code
.upars Source code
.vb_check Source code
.warn_march_makevars Source code
As.mcmc.list Man page Source code
OUT Man page
PKG_CPPFLAGS_env_fun Source code
RNG Man page
Rhat Man page Source code
[.simsummary Man page
`%ifNULL%` Source code
`names<-.stanfit` Source code
all_int_eq Source code
append_id Source code
as.array.stanfit Man page Source code
as.data.frame.stanfit Man page Source code
as.matrix.stanfit Man page Source code
as.mcmc.list.stanfit Source code
autocorrelation Source code
autocovariance Source code
avoid_crash Source code
boost_path_fun Source code
boost_path_fun2 Source code
boost_url Source code
calc_starts Source code
check_args Source code
check_divergences Man page Source code
check_energy Man page Source code
check_hmc_diagnostics Man page Source code
check_pars Source code
check_pars_first Source code
check_pars_second Source code
check_seed Source code
check_treedepth Man page Source code
color_vector Source code
color_vector_chain Source code
combine_msd_quan Source code
config_argss Source code
constrain_pars Man page
constrain_pars,ANY-method Man page
constrain_pars,stanfit-method Man page
conv_quantile Source code
cpp_object_initializer Man page
create_progress_html_file Source code
create_skeleton Source code
cxxdso-class Man page
cxxfun_from_dll Source code
cxxfun_from_dso_bin Source code
cxxfunctionplus Source code
data_list2array Source code
data_preprocess Source code
default_summary_probs Source code
delete_stan_demo_folder Source code
dim.stanfit Man page Source code
dimnames.stanfit Man page Source code
doctor_cppcode Source code
dotfnames_to_sqrfnames Source code
dso_path Source code
eigen_path_fun Source code
ess_bulk Man page Source code
ess_mean Source code
ess_quantile Source code
ess_rfun Source code
ess_sd Source code
ess_tail Man page Source code
exposeStanClass Source code
expose_stan_functions Man page Source code
expose_stan_functions_hacks Source code
extract Man page
extract,stanfit-method Man page
extract_sparse_parts Man page Source code
fft_next_good_size Source code
filename_ext Source code
filename_rm_ext Source code
flat_one_par Source code
flatnames Source code
get_CXX Source code
get_Rcpp_module_def_code Source code
get_adaptation_info Man page
get_adaptation_info,ANY-method Man page
get_adaptation_info,stanfit-method Man page
get_all_makefile_paths Source code
get_bfmi Man page Source code
get_cppcode Man page
get_cppcode,ANY-method Man page
get_cppcode,stanmodel-method Man page
get_cppo_mode Man page
get_cppo_mode,stanfit-method Man page
get_cxxflags Man page
get_cxxflags,stanmodel-method Man page
get_cxxo_level Source code
get_dims_from_fnames Source code
get_divergent_iterations Man page Source code
get_elapsed_time Man page
get_elapsed_time,ANY-method Man page
get_elapsed_time,stanfit-method Man page
get_inits Man page
get_inits,stanfit-method Man page
get_kept_samples Source code
get_kept_samples2 Source code
get_logposterior Man page
get_logposterior,ANY-method Man page
get_logposterior,stanfit-method Man page
get_low_bfmi_chains Man page Source code
get_makefile_flags Source code
get_makefile_txt Source code
get_max_treedepth_iterations Man page Source code
get_model_strcode Source code
get_num_divergent Man page Source code
get_num_leapfrog_per_iteration Man page Source code
get_num_max_treedepth Man page Source code
get_num_upars Man page
get_num_upars,ANY-method Man page
get_num_upars,stanfit-method Man page
get_par_summary Source code
get_par_summary_msd Source code
get_par_summary_quantile Source code
get_posterior_mean Man page
get_posterior_mean,ANY-method Man page
get_posterior_mean,stanfit-method Man page
get_rhat_cols Source code
get_rng Man page Source code
get_sampler_params Man page
get_sampler_params,ANY-method Man page
get_sampler_params,stanfit,logical-method Man page
get_samples Source code
get_samples2 Source code
get_seed Man page
get_seed,stanfit-method Man page
get_seeds Man page
get_seeds,stanfit-method Man page
get_stan_param_names Source code
get_stancode Man page
get_stancode,stanfit-method Man page
get_stancode,stanmodel-method Man page
get_stanmodel Man page
get_stanmodel,stanfit-method Man page
get_stream Man page Source code
get_time_from_csv Source code
get_treedepth_threshold Source code
git_head Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code
gqs Man page
gqs,stanmodel-method Man page
gqs_light Source code
grab_cxxfun,cxxdso-method Man page
grad_log_prob Man page
grad_log_prob,ANY-method Man page
grad_log_prob,stanfit-method Man page
idx_col2rowm Source code
idx_row2colm Source code
if_debug_defined Source code
if_ndebug_defined Source code
inc_path_fun Source code
init_rstan_opt_env Source code
inlineCxxPlugin Source code
is.array.stanfit Man page Source code
is.sparc Source code
is.stanfit Source code
is.stanreg Source code
is_arg_deprecated Source code
is_arg_recognizable Source code
is_constant Source code
is_dir_writable Source code
is_dso_loaded,cxxdso-method Man page
is_legal_stan_vname Source code
is_named_list Source code
is_null_cxxfun Source code
is_null_ptr Source code
is_sf_valid Source code
is_sfinstance_valid Source code
is_sm_valid Source code
last_makefile Source code
legitimate_model_name Source code
legitimate_space_in_path Source code
list_as_integer_if_doable Source code
log_lik_i_stanfit Source code
log_lik_i_upars_stanfit Source code
log_prob Man page
log_prob,ANY-method Man page
log_prob,stanfit-method Man page
log_prob_upars_stanfit Source code
log_sum_exp Source code
loo Man page
loo,stanfit-method Man page
loo.stanfit Man page Source code
loo_moment_match Man page
loo_moment_match,stanfit-method Man page
loo_moment_match.stanfit Man page Source code
lookup Man page Source code
makeconf_path Man page Source code
makevars_user Source code
mcse_mean Source code
mcse_quantile Source code
mcse_sd Source code
mk_cppmodule Source code
mklist Source code
monitor Man page Source code
multi_idx_row2colm Source code
names.stanfit Man page Source code
names<-.stanfit Man page
new_empty_stanfit Source code
nlist Man page
num_pars Source code
obj_size_str Source code
optimizing Man page
optimizing,stanmodel-method Man page
pairs.stanfit Man page
par_traceplot Source code
paridx_fun Source code
pars_total_indexes Source code
parse_data Source code
parse_stancsv_comments Source code
plot,stanfit,missing-method Man page
plot,stanfit-method Man page
plot.sbc Man page Source code
plot_rhat_legend Source code
post_draws_stanfit Source code
prep_call_sampler Source code
print.sbc Man page Source code
print.simsummary Man page Source code
print.stanfit Man page Source code
quietgg Man page Source code
r_scale Source code
read_comments Source code
read_csv_header Source code
read_dso Source code
read_model_from_con Source code
read_one_stan_csv Source code
read_rdump Man page Source code
read_stan_csv Man page Source code
real_is_integer Source code
remove_empty_pars Source code
rhat_rfun Source code
rm_last_makefile Source code
rm_rstan_makefile_flags Source code
rstan Man page
rstan-internal Man page
rstan-package Man page
rstan-plotting-functions Man page
rstan.package.skeleton Man page Source code
rstan_ess Source code
rstan_ess2_cpp Source code
rstan_gg_options Man page Source code
rstan_ggtheme_options Man page Source code
rstan_options Man page Source code
rstan_relist Source code
rstan_seq_perm Source code
rstan_splitrhat Source code
rstan_splitrhat2_cpp Source code
rstanplugin Source code
rstanvis_aes_ops Source code
rstanvis_hist_theme Source code
rstanvis_multiparam_theme Source code
rstanvis_theme Source code
rstudio_stanc Source code
sample_indices Source code
sampler_param_matrix Source code
sampler_param_vector Source code
sampling Man page
sampling,stanmodel-method Man page Man page
sbc Man page Source code
sbcFitFile Source code
seq_array_ind Source code
set_cppo Man page Source code
set_makefile_flags Source code
set_rstan_ggplot_defaults Source code
sflist2stanfit Man page Source code
should_return_NA Source code
show,cxxdso-method Man page
show,stanfit-method Man page
show,stanmodel-method Man page
split_chains Source code
sqrfnames_to_dotfnames Source code
stan Man page Source code
stan_ac Man page Source code
stan_demo Man page Source code
stan_dens Man page Source code
stan_diag Man page Source code
stan_divergence Source code
stan_ess Man page Source code
stan_hist Man page Source code
stan_mcse Man page Source code
stan_model Man page Source code
stan_par Man page Source code
stan_plot Man page Source code
stan_plot_inferences Source code
stan_rdump Man page Source code
stan_rhat Man page Source code
stan_sample Source code
stan_scat Man page Source code
stan_stepsize Source code
stan_trace Man page Source code
stan_treedepth Source code
stan_version Man page Source code
stanc Man page Source code
stanc_builder Man page Source code
stanfit Man page
stanfit-class Man page
stanmodel-class Man page
summary,stanfit-method Man page
summary_sim Source code
summary_sim_ess Source code
summary_sim_quan Source code
summary_sim_rhat Source code
system_info Source code
test_221 Source code
throw_sampler_warnings Source code
traceplot Man page
traceplot,stanfit-method Man page
u_scale Source code
unconstrain_pars Man page
unconstrain_pars,ANY-method Man page
unconstrain_pars,stanfit-method Man page
unconstrain_pars_stanfit Source code
unique_par Source code
vb Man page
vb,stanmodel-method Man page
writable_sample_file Source code
z_scale Source code
rstan documentation built on Sept. 8, 2022, 5:06 p.m.