shazam: Immunoglobulin Somatic Hypermutation Analysis
Version 0.1.8

Provides a computational framework for Bayesian estimation of antigen-driven selection in immunoglobulin (Ig) sequences, providing an intuitive means of analyzing selection by quantifying the degree of selective pressure. Also provides tools to profile mutations in Ig sequences, build models of somatic hypermutation (SHM) in Ig sequences, and make model-dependent distance comparisons of Ig repertoires.

Package details

AuthorMohamed Uduman [aut], Gur Yaari [aut], Namita Gupta [aut], Jason Vander Heiden [aut, cre], Ang Cui [ctb], Susanna Marquez [ctb], Julian Zhou [ctb], Nima Nouri [ctb], Steven Kleinstein [aut, cph]
Date of publication2017-06-30 21:46:57 UTC
MaintainerJason Vander Heiden <jason.vanderheiden@yale.edu>
LicenseCC BY-SA 4.0
Version0.1.8
URL http://shazam.readthedocs.io
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("shazam")

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shazam documentation built on July 4, 2017, 9:43 a.m.