shazam: Immunoglobulin Somatic Hypermutation Analysis
Version 0.1.9

Provides a computational framework for Bayesian estimation of antigen-driven selection in immunoglobulin (Ig) sequences, providing an intuitive means of analyzing selection by quantifying the degree of selective pressure. Also provides tools to profile mutations in Ig sequences, build models of somatic hypermutation (SHM) in Ig sequences, and make model-dependent distance comparisons of Ig repertoires. Citations: Gupta and Vander Heiden, et al (2015) , Yaari, et al (2012) , Yaari, et al (2013) , Cui, et al (2016) .

Package details

AuthorMohamed Uduman [aut], Gur Yaari [aut], Namita Gupta [aut], Jason Vander Heiden [aut, cre], Ang Cui [ctb], Susanna Marquez [ctb], Julian Zhou [ctb], Nima Nouri [ctb], Steven Kleinstein [aut, cph]
Date of publication2018-03-31 22:32:38 UTC
MaintainerJason Vander Heiden <[email protected]>
LicenseCC BY-SA 4.0
Package repositoryView on CRAN
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shazam documentation built on April 1, 2018, 12:01 p.m.