DensityThreshold-class: Output of the 'dens' method of findThreshold

In shazam: Immunoglobulin Somatic Hypermutation Analysis

Output of the dens method of findThreshold

Description

DensityThreshold contains output from the dens method findThreshold.

Usage

## S4 method for signature 'DensityThreshold'
print(x)

## S4 method for signature 'DensityThreshold,missing'
plot(x, y, ...)

Arguments

x	DensityThreshold object
y	ignored.
...	arguments to pass to plotDensityThreshold.

Slots

x

input distance vector with NA or infinite values removed.

bandwidth

bandwidth value fit during density estimation.

xdens

x-axis (distance value) vector for smoothed density estimate.

ydens

y-axis (density) vector for smoothed density estimate.

threshold

distance threshold that separates two modes of the input distribution.

See Also

findThreshold

shazam documentation built on Oct. 3, 2023, 1:06 a.m.