MutabilityModel-class: S4 class defining a mutability model

In shazam: Immunoglobulin Somatic Hypermutation Analysis

S4 class defining a mutability model

Description

MutabilityModel defines a data structure for the 5-mer motif-based SHM targeting mutability model.

Usage

## S4 method for signature 'MutabilityModel'
print(x)

## S4 method for signature 'MutabilityModel'
as.data.frame(x)

Arguments

x	MutabilityModel object.

Slots

.Data

numeric vector containing 5-mer mutability estimates

source

character vector annotating whether the mutability was inferred or directly measured.

numMutS

a number indicating the number of silent mutations used for estimating mutability

numMutR

a number indicating the number of replacement mutations used for estimating mutability

shazam documentation built on Oct. 3, 2023, 1:06 a.m.