Files in shazam
Immunoglobulin Somatic Hypermutation Analysis
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/sysdata.rda
R/ConvertNumbering.R
R/kedd.R
R/Baseline.R
R/RegionDefinitions.R
R/MutationDefinitions.R
R/TargetingModels.R
R/RegionsExtend.R
R/MutationProfiling.R
R/Core.R
R/DistToNearest.R
R/Deprecated.R
R/Shazam.R
R/Shmulate.R
inst/CITATION
inst/doc/Baseline-Vignette.Rmd
inst/doc/Targeting-Vignette.Rmd
inst/doc/DistToNearest-Vignette.Rmd
inst/doc/Mutation-Vignette.Rmd
inst/doc/Targeting-Vignette.R
inst/doc/Mutation-Vignette.R
inst/doc/DistToNearest-Vignette.pdf
inst/doc/Shmulate-Vignette.Rmd
inst/doc/Shmulate-Vignette.R
inst/doc/DistToNearest-Vignette.R
inst/doc/Baseline-Vignette.pdf
inst/doc/Shmulate-Vignette.pdf
inst/doc/Mutation-Vignette.pdf
inst/doc/Targeting-Vignette.pdf
inst/doc/Baseline-Vignette.R
build/vignette.rds
build/partial.rdb
vignettes/Baseline-Vignette.Rmd
vignettes/Targeting-Vignette.Rmd
vignettes/DistToNearest-Vignette.Rmd
vignettes/Mutation-Vignette.Rmd
vignettes/Shmulate-Vignette.Rmd
vignettes/Baseline-Vignette.md
data/IMGT_VDJ_BY_REGIONS.rda
data/CHARGE_MUTATIONS.rda
data/HKL_S1F.rda
data/U5N.rda
data/IMGT_V.rda
data/MK_RS5NF.rda
data/HYDROPATHY_MUTATIONS.rda
data/IMGT_V_BY_SEGMENTS.rda
data/IMGT_V_BY_CODONS.rda
data/POLARITY_MUTATIONS.rda
data/HH_S1F.rda
data/IMGT_VDJ.rda
data/HKL_S5F.rda
data/IMGT_V_BY_REGIONS.rda
data/VOLUME_MUTATIONS.rda
data/HH_S5F.rda
data/MK_RS1NF.rda
man/extendSubstitutionMatrix.Rd
man/calcExpectedMutations.Rd
man/createMutabilityMatrix.Rd
man/plotBaselineDensity.Rd
man/makeAverage1merSub.Rd
man/MUTATION_SCHEMES.Rd
man/makeAverage1merMut.Rd
man/calcObservedMutations.Rd
man/slideWindowTune.Rd
man/makeDegenerate5merMut.Rd
man/IMGT_SCHEMES.Rd
man/editBaseline.Rd
man/MutabilityModel-class.Rd
man/createTargetingModel.Rd
man/plotDensityThreshold.Rd
man/distToNearest.Rd
man/observedMutations.Rd
man/createMutationDefinition.Rd
man/plotTune.Rd
man/plotBaselineSummary.Rd
man/calculateMutability.Rd
man/slideWindowSeq.Rd
man/MK_RS1NF.Rd
man/writeTargetingDistance.Rd
man/createSubstitutionMatrix.Rd
man/calcTargetingDistance.Rd
man/TargetingModel-class.Rd
man/HKL_S5F.Rd
man/plotSlideWindowTune.Rd
man/shazam.Rd
man/shmulateTree.Rd
man/minNumMutationsTune.Rd
man/collapseClones.Rd
man/setRegionBoundaries.Rd
man/calcBaseline.Rd
man/TargetingMatrix-class.Rd
man/expectedMutations.Rd
man/HH_S5F.Rd
man/testBaseline.Rd
man/summarizeBaseline.Rd
man/minNumSeqMutationsTune.Rd
man/extendMutabilityMatrix.Rd
man/makeGraphDf.Rd
man/Baseline-class.Rd
man/groupBaseline.Rd
man/GmmThreshold-class.Rd
man/RegionDefinition-class.Rd
man/DensityThreshold-class.Rd
man/slideWindowDb.Rd
man/HH_S1F.Rd
man/createRegionDefinition.Rd
man/U5N.Rd
man/shmulateSeq.Rd
man/MutationDefinition-class.Rd
man/HKL_S1F.Rd
man/plotMutability.Rd
man/convertNumbering.Rd
man/MK_RS5NF.Rd
man/createBaseline.Rd
man/plotGmmThreshold.Rd
man/slideWindowTunePlot.Rd
man/createTargetingMatrix.Rd
man/consensusSequence.Rd
man/shazam-package.Rd
man/findThreshold.Rd
man/makeDegenerate5merSub.Rd
