Files in shazam
Immunoglobulin Somatic Hypermutation Analysis

inst
inst/CITATION
inst/doc
inst/doc/Baseline-Vignette.R inst/doc/DistToNearest-Vignette.pdf inst/doc/Baseline-Vignette.pdf inst/doc/DistToNearest-Vignette.Rmd inst/doc/Targeting-Vignette.Rmd inst/doc/DistToNearest-Vignette.R inst/doc/Mutation-Vignette.pdf inst/doc/Mutation-Vignette.Rmd inst/doc/Targeting-Vignette.R inst/doc/Targeting-Vignette.pdf inst/doc/Mutation-Vignette.R inst/doc/Baseline-Vignette.Rmd
inst/markr
inst/markr/build.R
NAMESPACE
NEWS.md
data
data/HH_S1F.rda
data/VOLUME_MUTATIONS.rda
data/HYDROPATHY_MUTATIONS.rda
data/HH_S5F.rda
data/MK_RS1NF.rda
data/CHARGE_MUTATIONS.rda
data/POLARITY_MUTATIONS.rda
data/HKL_S1F.rda
data/IMGT_V_BY_REGIONS.rda
data/IMGT_V.rda
data/HKL_S5F.rda
data/U5N.rda
data/MK_RS5NF.rda
R
R/DistToNearest.R R/Core.R R/Shmulate.R
R/sysdata.rda
R/Baseline.R R/Shazam.R R/TargetingModels.R R/RegionDefinitions.R R/MutationDefinitions.R R/MutationProfiling.R
vignettes
vignettes/DistToNearest-Vignette.Rmd vignettes/Targeting-Vignette.Rmd vignettes/Mutation-Vignette.Rmd vignettes/Baseline-Vignette.Rmd README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/HKL_S5F.Rd man/HH_S5F.Rd man/clearConsole.Rd man/HH_S1F.Rd man/Baseline-class.Rd man/DensityThreshold-class.Rd man/shmulateTree.Rd man/plotDensityThreshold.Rd man/TargetingModel-class.Rd man/createMutationDefinition.Rd man/calcExpectedMutations.Rd man/plotMutability.Rd man/editBaseline.Rd man/shazam.Rd man/slideWindowDb.Rd man/RegionDefinition-class.Rd man/slideWindowTunePlot.Rd man/summarizeBaseline.Rd man/calcBaseline.Rd man/plotBaselineDensity.Rd man/createBaseline.Rd man/IMGT_SCHEMES.Rd man/plotTune.Rd man/getnproc.Rd man/testBaseline.Rd man/makeDegenerate5merSub.Rd man/createTargetingMatrix.Rd man/MUTATION_SCHEMES.Rd man/slideWindowTune.Rd man/groupBaseline.Rd man/MutationDefinition-class.Rd man/HKL_S1F.Rd man/expectedMutations.Rd man/U5N.Rd man/minNumMutationsTune.Rd man/extendSubstitutionMatrix.Rd man/calcObservedMutations.Rd man/writeTargetingDistance.Rd man/observedMutations.Rd man/collapseClones.Rd man/getPlatform.Rd man/findThreshold.Rd man/MK_RS1NF.Rd man/createMutabilityMatrix.Rd man/getBaselineStats.Rd man/createSubstitutionMatrix.Rd man/GmmThreshold-class.Rd man/calcTargetingDistance.Rd man/MK_RS5NF.Rd man/makeAverage1merMut.Rd man/createRegionDefinition.Rd man/makeDegenerate5merMut.Rd man/plotBaselineSummary.Rd man/extendMutabilityMatrix.Rd man/plotGmmThreshold.Rd man/createTargetingModel.Rd man/shmulateSeq.Rd man/slideWindowSeq.Rd man/minNumSeqMutationsTune.Rd man/makeAverage1merSub.Rd man/distToNearest.Rd
shazam documentation built on July 4, 2017, 9:43 a.m.