TargetingMatrix-class: S4 class defining a targeting matrix
In shazam: Immunoglobulin Somatic Hypermutation Analysis

TargetingMatrix-class

R Documentation

S4 class defining a targeting matrix

Description

TargetingMatrix defines a data structure for just the targeting matrix (as opposed to the entire TargetingModel)

Slots

.Data: matrix.
numMutS: number indicating the number of silent mutations used for estimating mutability.
numMutR: number indicating the number of replacement mutations used for estimating mutability.

shazam documentation built on Nov. 5, 2025, 5:43 p.m.

shazam index

Package overview README.md Distance to nearest neighbor Mutation analysis Selection quantification SHM targeting models Simulating sequence mutations Shazam: Inferring SHM targeting models Shazam: Mutation analysis Shazam: Quantification of selection pressure Shazam: Simulating sequence mutations Shazam: Tuning clonal assignment thresholds with nearest neighbor distances

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