Nothing
tpfit_me <-
function(data, coords, direction, tolerance = pi/8, max.it = 9000, mle = "avg") {
# Estimation for matrix of transition rates
# ( Maximum Entropy Method )
#
# data vector of data
# coords coordinates matrix
# direction vector (or versor) of choosen direction
# max.it maximum number of iterations for the optimization
# tolerance angle tolerance (in radians)
# mle argument to pass to the function tpfit
if (!is.matrix(coords)) coords <- as.matrix(coords)
n <- dim(coords)[1]
nc <- dim(coords)[2]
if (length(direction) != nc) stop("wrong length of direction vector")
if (!is.factor(data)) data <- as.factor(data)
nl <- nlevels(data)
storage.mode(max.it) <- "integer"
if (n < (nl^2 + nl)) stop("there are not enough data to estimate the parameters")
proportion <- table(data)
proportion <- proportion / sum(proportion)
loc.id <- which_lines(coords, direction, tolerance)
ml <- mlen(data, coords, loc.id, direction, mle)
s <- c(proportion) / c(ml)
fnew <- vector("numeric", nl)
fnew <- .C('cEmbFrq', s = as.double(s), nk = as.integer(nl), mt = as.integer(max.it),
eps = as.double(.Machine$double.eps), f = as.double(fnew),
PACKAGE = "spMC")$f
Fmat <- outer(fnew, fnew)
diag(Fmat) <- 0
Rmat <- diag(1 / (ml * apply(Fmat, 2, sum))) %*% Fmat
diag(Rmat) <- -apply(Rmat, 1, sum)
res <- list()
res$coefficients <- Rmat
res$prop <- as.double(proportion)
names(res$prop) <- levels(data)
colnames(res$coefficients) <- names(res$prop)
rownames(res$coefficients) <- names(res$prop)
res$tolerance <- as.double(tolerance)
class(res) <- "tpfit"
return(res)
}
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.