TiTvRatio: Transition / Transversion Ratio
In strataG: Summaries and Population Structure Analyses of Genetic Data
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Calculate transition/transversion ratio. Test substitution
type of two bases.
Usage
1
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3
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5
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7
Arguments
x
a gtypes object with aligned sequences or a list of
aligned DNA sequences.
b1, b2
two bases to be compared.
Value
TiTvRatio: a vector providing the number of
transitions (Ti), transversions (Tv), and the
transition/transversion ratio (Ti.Tv.ratio).
subType: either "ti" for transition, or "tv" for transversion.
isTi and isTv: a logical identifying whether
the b1 to b2 is a transition or transversion.
Author(s)
Eric Archer eric.archer@noaa.gov
Examples
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9
data(dolph.seqs)
TiTvRatio(dolph.seqs)
subType("a", "c")
isTi("a", "c")
isTv("a", "c")
strataG documentation built on Feb. 28, 2020, 9:07 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Calculate transition/transversion ratio. Test substitution type of two bases.
Usage
1 2 3 4 5 6 7 |
Arguments
x |
a gtypes object with aligned sequences or a list of aligned DNA sequences. |
b1, b2 |
two bases to be compared. |
Value
TiTvRatio: a vector providing the number of
transitions (Ti), transversions (Tv), and the
transition/transversion ratio (Ti.Tv.ratio).
subType: either "ti" for transition, or "tv" for transversion.
isTi and isTv: a logical identifying whether
the b1 to b2 is a transition or transversion.
Author(s)
Eric Archer eric.archer@noaa.gov
Examples
1 2 3 4 5 6 7 8 9 | data(dolph.seqs)
TiTvRatio(dolph.seqs)
subType("a", "c")
isTi("a", "c")
isTv("a", "c")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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