mega: Read and Write MEGA
In strataG: Summaries and Population Structure Analyses of Genetic Data

Description Usage Arguments Value Author(s) References

Read and write MEGA formatted files.

read.mega(file)

write.mega(
  g,
  file = NULL,
  label = NULL,
  line.width = 60,
  locus = 1,
  as.haplotypes = TRUE
)

`file`	a MEGA-formatted file of sequences.
`g`	a gtypes object.
`label`	label for MEGA filename (.meg). If `NULL`, the gtypes description is used if present.
`line.width`	width of sequence lines.
`locus`	number or name of locus to write.
`as.haplotypes`	output sequences as haplotypes? If `TRUE`, contents of `@sequences` slot are returned - treated as if they were haplotypes. If `FALSE`, one sequence per individual is returned.

for read.mega, a list of:

title: title of MEGA file
dna.seq: DNA sequences in DNAbin format

Eric Archer eric.archer@noaa.gov

Sudhir Kumar, Glen Stecher, and Koichiro Tamura (2015) MEGA7: Molecular Evolutionary Genetics Analysis version 7.0. Molecular Biology and Evolution (submitted). Available at: http://www.megasoftware.net

strataG documentation built on Feb. 28, 2020, 9:07 a.m.