tmod: Feature Set Enrichment Analysis for Metabolomics and Transcriptomics

Methods and feature set definitions for feature or gene set enrichment analysis in transcriptional and metabolic profiling data. Package includes tests for enrichment based on ranked lists of features, functions for visualisation and multivariate functional analysis.

Install the latest version of this package by entering the following in R:
install.packages("tmod")
AuthorJanuary Weiner
Date of publication2016-09-08 16:30:33
MaintainerJanuary Weiner <january.weiner@gmail.com>
LicenseGPL (>= 2.0)
Version0.31
http://bioinfo.mpiib-berlin.mpg.de/tmod/

View on CRAN

Functions

[ Man page
Egambia Man page
evidencePlot Man page
getGenes Man page
getModuleMembers Man page
hgEnrichmentPlot Man page
makeTmod Man page
modmetabo Man page
pvalEffectPlot Man page
show Man page
showGene Man page
showModule Man page
show,tmod-method Man page
tbmprof Man page
tmod Man page
tmodAUC Man page
tmodCERNOtest Man page
tmod-class Man page
tmod-data Man page
tmodDecideTests Man page
tmodHGtest Man page
tmodImportMSigDB Man page
tmodLimmaDecideTests Man page
tmodLimmaTest Man page
tmodLimmaTopTable Man page
[,tmod-method Man page
tmod-package Man page
tmodPal Man page
tmodPanelPlot Man page
tmodPCA Man page
tmodSummary Man page
tmodTagcloud Man page
tmodUtest Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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