Files in tmod
Feature Set Enrichment Analysis for Metabolomics and Transcriptomics

MD5
ChangeLog
README.md
NAMESPACE
DESCRIPTION
R/tmod-package.R R/celltypes.R R/classes2.R R/limma.R R/multivariate.R R/importexport.R R/modmetabo.R R/visualizations.R R/modstats.R R/Egambia.R R/plotwidgets.R R/lem.R R/tmodSummary.R R/helpers.R R/statisticaltests.R R/tmod-data.R R/panelplots.R inst/doc/tmod.R
inst/doc/tmod.html
inst/doc/tmod.Rmd
build/vignette.rds
tests/testthat.R
tests/testthat/res_CERNO.csv
tests/testthat/res_LEA.csv
tests/testthat/test_importexport.R tests/testthat/test_data.R
tests/testthat/msigdb_test.xml
tests/testthat/test_visualisations.R
tests/testthat/res_Z.csv
tests/testthat/test_eigengenes.R
tests/testthat/res_HG.csv
tests/testthat/res_PLAGE.csv
tests/testthat/res_GeneSetTest.csv
tests/testthat/sample_results.csv
tests/testthat/test_class.R
tests/testthat/res_AUC.csv
tests/testthat/res_U.csv
tests/testthat/test_tests.R
tests/testthat/sample_data.csv
tests/testthat/res_tmodDecideTests.csv
vignettes/bibliography.bib
vignettes/logo.png
vignettes/style.css
vignettes/tmod.Rmd
data/datalist
data/modmetabo.rda
data/vaccination.rda
data/EgambiaResults.rda
data/Egambia.rda
data/tmod.rda
data/tbmprof.rda
data/cell_signatures.rda
man/tmodPanelPlot.Rd man/tmodTagcloud.Rd man/filterGS.Rd man/tmodImportMSigDB.Rd man/upset.Rd man/getGenes.Rd man/showGene.Rd man/hgEnrichmentPlot.Rd man/pvalEffectPlot.Rd man/vaccination.Rd man/tmodPal.Rd man/pcaplot.Rd man/tmodUtest.Rd man/Egambia.Rd man/makeTmodFromDataFrame.Rd man/check_tmod_gs.Rd man/getModuleMembers.Rd man/tmodSummary.Rd man/tmod2DataFrame.Rd man/cell_signatures.Rd man/tmod2tmodGS.Rd man/modmetabo.Rd man/ggPanelplot.Rd man/tmodLimmaTopTable.Rd man/simplePie.Rd man/tmodLEA.Rd man/eigengene.Rd man/modGroups.Rd man/tmodLEASummary.Rd man/evidencePlot.Rd man/ggEvidencePlot.Rd man/tmodGS-class.Rd man/tmod_ids.Rd man/tmod-package.Rd man/modcors.Rd man/modjaccard.Rd man/tmod-data.Rd man/modCorPlot.Rd man/tmodLimmaDecideTests.Rd man/tmodDecideTests.Rd man/tmodLimmaTest.Rd man/tmodPCA.Rd man/modOverlaps.Rd man/tmodAUC.Rd
tmod documentation built on Sept. 26, 2022, 5:05 p.m.