tmod2DataFrame: Convert a tmod module set into a data frame

In tmod: Feature Set Enrichment Analysis for Metabolomics and Transcriptomics

Convert a tmod module set into a data frame

Description

Convert a tmod module set into a data frame

Usage

tmod2DataFrame(
  mset,
  rows = "modules",
  module_col = "module_id",
  feature_col = "feature_id",
  sep = ","
)

Arguments

mset	a tmod object (e.g. generated by makeTmod)
rows	if "modules", then there will be a row corresponding to each module (gene set); if "features", then there will be a row corresponding to each gene.
module_col	Name of the column with module (gene set) IDs
feature_col	Name of the column with feature (gene) IDs
sep	separator used to collate module IDs (if rows=="features") or feature IDs (if rows=="modules")

See Also

makeTmodGS, makeTmod

tmod documentation built on March 31, 2023, 9 p.m.