showGene: A combined beeswarm / boxplot

In tmod: Feature Set Enrichment Analysis for Metabolomics and Transcriptomics

A combined beeswarm / boxplot

Description

A combined beeswarm / boxplot

Usage

showGene(
  data,
  group,
  main = "",
  pch = 19,
  xlab = "",
  ylab = "log2 expression",
  las = 2,
  pwcol = NULL,
  ...
)

Arguments

data	a vector of numeric values to be plotted
group	factor describing the groups
main	title of the plot
pch	character to plot the points
xlab, ylab	x and y axis labels
las	see par()
pwcol	colors of the points (see beeswarm)
...	any additional parameters to be passed to the beeswarm command

Details

This is just a simple wrapper around the beeswarm() and boxplot() commands.

Examples

data(Egambia)
E <- as.matrix(Egambia[,-c(1:3)])
showGene(E["20799",], rep(c("CTRL", "TB"), each=15))

tmod documentation built on March 31, 2023, 9 p.m.