API for tmod
Feature Set Enrichment Analysis for Metabolomics and Transcriptomics

Global functions
.adapt_cex Source code
.alphacol Source code
.auto_labels Source code
.boxpie.addlines Source code
.boxpie.calculate.polygon Source code
.catf Source code
.check.limma Source code
.cohensd Source code
.combn_upset Source code
.getColFunc Source code
.getmodules2 Source code
.gettmod Source code
.gradientpal Source code
.importMsigDBGMT Source code
.importMsigDBXML Source code
.invert_hash Source code
.limma.ci.msd Source code
.limma.msd Source code
.module_bind Source code
.mset_sanity_check Source code
.onAttach Source code
.pformat Source code
.piecheck Source code
.plotGrid Source code
.preparePlotFunc Source code
.printf Source code
.pvalEffectPlotLegend Source code
.selCalcXYWH Source code
.selPiePlotFunc Source code
.tmod2DataFrameRowsFeatures Source code
.tmod2DataFrameRowsModule Source code
.tmodTest Source code
.upset_find_groups Source code
.upset_generate_combinations Source code
.xcheck Source code
Egambia Man page
[,tmod-method Man page
check_tmod Source code
eigengene Man page Source code
evidencePlot Man page Source code
getGenes Man page Source code
getModuleMembers Man page Source code
hgEnrichmentPlot Man page Source code
length Man page
length,tmod-method Man page
makeTmod Man page Source code
makeTmodFromDataFrame Man page Source code
mbind Man page Source code
modCorPlot Man page Source code
modGroups Man page Source code
modOverlaps Man page Source code
modcors Man page Source code
modjaccard Man page Source code
modmetabo Man page
mset2mtx Man page Source code
mtx2mset Man page Source code
pcaplot Man page Source code
plot.tmodPCA Source code
print.tmodSummary Source code
pvalEffectPlot Man page Source code
renameMods Man page Source code
show Man page
show,tmod-method Man page
showGene Man page Source code
showModule Man page Source code
simpleBoxpie Man page Source code
simplePie Man page Source code
simpleRug Man page Source code
tbmprof Man page
tmod Man page
tmod-class Man page
tmod-data Man page
tmod-package Man page
tmod2DataFrame Man page Source code
tmodAUC Man page Source code
tmodCERNOtest Man page Source code
tmodDecideTests Man page Source code
tmodGeneSetTest Man page Source code
tmodHGtest Man page Source code
tmodImportMSigDB Man page Source code
tmodLEA Man page Source code
tmodLEASummary Man page Source code
tmodLimmaDecideTests Man page Source code
tmodLimmaTest Man page Source code
tmodLimmaTopTable Man page Source code
tmodPCA Man page Source code
tmodPLAGEtest Man page Source code
tmodPal Man page Source code
tmodPanelPlot Man page Source code
tmodSummary Man page Source code
tmodTagcloud Man page Source code
tmodUtest Man page Source code
tmodWZtest Man page Source code
tmodZtest Man page Source code
upset Man page Source code
upsetPlot Source code
vaccination Man page
tmod documentation built on Oct. 23, 2020, 6:12 p.m.