xseq: Assessing Functional Impact on Gene Expression of Mutations in Cancer

A hierarchical Bayesian approach to assess functional impact of mutations on gene expression in cancer. Given a patient-gene matrix encoding the presence/absence of a mutation, a patient-gene expression matrix encoding continuous value expression data, and a graph structure encoding whether two genes are known to be functionally related, xseq outputs: a) the probability that a recurrently mutated gene g influences gene expression across the population of patients; and b) the probability that an individual mutation in gene g in an individual patient m influences expression within that patient.

Package details

AuthorJiarui Ding, Sohrab Shah
MaintainerJiarui Ding <[email protected]>
LicenseGPL (>= 2)
Package repositoryView on CRAN
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xseq documentation built on May 29, 2017, 12:33 p.m.