cna.call | TCGA AML SNP6.0 GISTIC copy number alteration calls |
cna.logr | TCGA AML SNP6.0 copy number alteration data |
ConvertXseqOutput | Convert xseq output to a data.frame |
EstimateExpression | A mixture modelling approach to estiamte whether a gene is... |
expr | TCGA AML SNP6.0 gene expression data |
FilterNetwork | Filter network |
GetExpressionDistribution | Get the conditional distributions for a set of genes |
ImputeKnn | Impute missing values (NAs) using K-nearest neighbour... |
InferXseqPosterior | Learn xseq parameters given an initialized model |
InitXseqModel | The datastructure to store the xseq models |
LearnXseqParameter | Learn xseq parameters given an initialized model |
mut | TCGA AML somatic mutation data |
net | A networks containing gene associations |
NormExpr | Remove the cis-effects of copy number alterations on gene... |
PlotRegulationHeatmap | Heatmap showing the connected genes' dysregulation... |
QuantileNorm | Quantile normalize a matrix |
SetXseqPrior | Set model paramerter priors |
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