PlotRegulationHeatmap: Heatmap showing the connected genes' dysregulation...

In xseq: Assessing Functional Impact on Gene Expression of Mutations in Cancer

Description

Heatmap showing the connected genes' dysregulation probabilities

Usage

PlotRegulationHeatmap(gene, posterior, mut, subtype = NULL,
  main = "in_Cancer", ...)

Arguments

gene	A character vector of gene names
posterior	The xseq posteriors, output of InferXseqPosterior or LearnXseqParameter
mut	A data.frame of mutations. The data.frame should have at least three columns of characters: sample, hgnc_symbol, and variant_type. The variant_type column cat be either "HOMD", "HLAMP", "MISSENSE", "NONSENSE", "FRAMESHIFT", "INFRAME", "SPLICE", "NONSTOP", "STARTGAINED", "SYNONYMOUS", "OTHER", "FUSION", "COMPLEX".
subtype	A vector representing a character of each patient, e.g., subtype
main	The heatmap title
...	Other parameters passed to heatmap.2

xseq documentation built on May 1, 2019, 9:47 p.m.