LearnXseqParameter: Learn xseq parameters given an initialized model

In xseq: Assessing Functional Impact on Gene Expression of Mutations in Cancer

Description

Learn xseq parameters given an initialized model

Usage

LearnXseqParameter(model, constraint, iter.max = 20, threshold = 1e-05,
  cis = FALSE, debug = FALSE, show.plot = TRUE)

Arguments

model	An xseq model
constraint	A list of constraints on θ_{G|F}.
iter.max	Maximum number of iterations in learning xseq parameters
threshold	The threshold to stop learning paramters
cis	Logical, cis-analysis or trans-analysis
debug	Logical, specifying whether debug information should be printed
show.plot	Logical, specifying whether to plot the Log-Likelihoods

Value

A list including the learned xseq model

xseq documentation built on May 1, 2019, 9:47 p.m.