Set model paramerter priors
1 2 |
mut |
A data.frame of mutations. The data.frame should have three columns of characters: sample, hgnc_symbol, and variant_type. The variant_type column cat be either "HOMD", "HLAMP", "MISSENSE", "NONSENSE", "FRAMESHIFT", "INFRAME", "SPLICE", "NONSTOP", "STARTGAINED", "SYNONYMOUS", "OTHER", "FUSION", "COMPLEX". |
expr.dis |
A list, the outputs from calling |
net |
A list of gene interactions |
regulation.direction |
Logical, whether considering the directionality
, i.e., up-regulation or down-regulatin of genes, only used
when |
cis |
Logical, cis analysis or trans analysis |
mut.type |
Character, only used when |
... |
Reserved for extension |
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