cna.call: TCGA AML SNP6.0 GISTIC copy number alteration calls

In xseq: Assessing Functional Impact on Gene Expression of Mutations in Cancer

Description

A dataset containing part of the The Cancer Genome Atlas acute myeloid leukemia Affymetrix SNP6.0 array copy number alteration calls from GISTIC

Usage

cna.call

Format

A matrix containing the GISTIC copy number calls of 454 genes in 197 patients:

• Row names are patient identifiers

• Colume names are official HGNC gene symbols

Each element of the matrix is coded:

• -2, homozygous deletions

• -1, hemizygous deletions

• 0, neutral

• 1, gain

• 2, amplifications

Source

https://www.synapse.org/#!Synapse:syn300013

xseq documentation built on May 1, 2019, 9:47 p.m.