Description Usage Arguments Value
Get the conditional distributions for a set of genes
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expr |
A matrix of gene expression values where each row corresponds to a patient and each column is a gene. |
mut |
A data.frame of mutations. The data.frame should have three columns of characters: sample, hgnc_symbol, and variant_type. The variant_type column cat be either "HOMD", "HLAMP", "MISSENSE", "NONSENSE", "FRAMESHIFT", "INFRAME", "SPLICE", "NONSTOP", "STARTGAINED", "SYNONYMOUS", "OTHER", "FUSION", "COMPLEX". |
cna.call |
A matrix containing the copy number calls, where each element is coded:
|
gene |
A character vector of official HGNC gene names |
type |
Character, either Gaussian ("gauss") or Student ("student") |
show.plot |
Logical, specifying whether to plot the fitted model |
A list containg the fitted expression distributions
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