Man pages for xseq
Assessing Functional Impact on Gene Expression of Mutations in Cancer
| cna.call | TCGA AML SNP6.0 GISTIC copy number alteration calls |
| cna.logr | TCGA AML SNP6.0 copy number alteration data |
| ConvertXseqOutput | Convert xseq output to a data.frame |
| EstimateExpression | A mixture modelling approach to estiamte whether a gene is... |
| expr | TCGA AML SNP6.0 gene expression data |
| FilterNetwork | Filter network |
| GetExpressionDistribution | Get the conditional distributions for a set of genes |
| ImputeKnn | Impute missing values (NAs) using K-nearest neighbour... |
| InferXseqPosterior | Learn xseq parameters given an initialized model |
| InitXseqModel | The datastructure to store the xseq models |
| LearnXseqParameter | Learn xseq parameters given an initialized model |
| mut | TCGA AML somatic mutation data |
| net | A networks containing gene associations |
| NormExpr | Remove the cis-effects of copy number alterations on gene... |
| PlotRegulationHeatmap | Heatmap showing the connected genes' dysregulation... |
| QuantileNorm | Quantile normalize a matrix |
| SetXseqPrior | Set model paramerter priors |
