hypothalamusSegmentation: Hypothalamus segmentation

In ANTsX/ANTsRNet: Neural Networks for Medical Image Processing

Hypothalamus segmentation

Description

Described here:

Usage

hypothalamusSegmentation(t1, antsxnetCacheDirectory = NULL, verbose = FALSE)

Arguments

t1	input 3-D T1-weighted brain image.
antsxnetCacheDirectory	destination directory for storing the downloaded template and model weights. Since these can be resused, if is.null(antsxnetCacheDirectory), these data will be downloaded to the inst/extdata/ subfolder of the ANTsRNet package.
verbose	print progress.

Details

\url{https://pubmed.ncbi.nlm.nih.gov/32853816/}

with the implementation available at:

\url{https://github.com/BBillot/hypothalamus_seg}

Value

hypothalamic subunit segmentation and probability images

• Label 1: left anterior-inferior

• Label 2: left anterior-superior

• Label 3: left posterior

• Label 4: left tubular inferior

• Label 5: left tubular superior

• Label 6: right anterior-inferior

• Label 7: right anterior-superior

• Label 8: right posterior

• Label 9: right tubular inferior

• Label 10: right tubular superior

Author(s)

Tustison NJ

Examples

## Not run: 
library( ANTsRNet )
library( keras )

image <- antsImageRead( "t1.nii.gz" )
hypo <- hypothalamusSegmentation( image )

## End(Not run)

ANTsX/ANTsRNet documentation built on April 28, 2024, 12:16 p.m.