mouseBrainExtraction: Mouse brain extraction
In ANTsX/ANTsRNet: Neural Networks for Medical Image Processing

mouseBrainExtraction

R Documentation

Mouse brain extraction

Description

Perform brain extraction of mouse MRI

Usage

mouseBrainExtraction(
  image,
  modality = c("t2", "ex5coronal", "ex5sagittal"),
  returnIsotropicOutput = FALSE,
  whichAxis = 2,
  verbose = FALSE
)

Arguments

`image`	input 3-D brain image (or list of images for multi-modal scenarios).
`modality`	image type. Options include: "t2": T2-weighted MRI "ex5coronal": E13.5 and E15.5 mouse embroyonic histology data. "ex5sagittal": E13.5 and E15.5 mouse embroyonic histology data.
`returnIsotropicOutput`	The network actually learns an interpolating function specific to the mouse brain. Setting this to true, the output images are returned isotropically resampled.
`whichAxis`	Specify direction for ex5 modalities..
`verbose`	print progress.

Value

brain probability mask

Author(s)

Tustison NJ

Examples

## Not run: 
library( ANTsRNet )
library( keras )

image <- antsImageRead( "brain.nii.gz" )
probabilityMask <- mouseBrainExtraction( image, modality = "t2" )

## End(Not run)

ANTsX/ANTsRNet documentation built on Nov. 21, 2024, 4:07 a.m.