Files in AllenInstitute/BarMixer

Hashed scRNA-seq demultiplexing for .h5 files

R/filter_rna_h5.R R/hash_matrix_analysis.R R/qc_plots.R R/qc_tables.R R/read_rna_h5.R R/totalseq_references.R R/util.R R/write_rna_h5.R README.md inst/add_tenx_rna_metadata.Rmd inst/hto_processing.Rmd inst/merge_h5_by_hash.Rmd inst/reference/get_gene_info.R inst/split_h5_by_hash.Rmd man/add_cell_ids.Rd man/add_h5_list_hash_results.Rd man/add_h5_transposed_matrix.Rd man/add_missing_hto_rows.Rd man/add_well_metadata.Rd man/binarize_hash.Rd man/binarize_hash_matrix.Rd man/cat_h5_list.Rd man/categorize_binary_hash_matrix.Rd man/check_matrix.Rd man/choose_chunk_size.Rd man/choose_integer_bits.Rd man/convert_char_na.Rd man/convert_char_na_recursive.Rd man/get_list_path.Rd man/h5_attr_list.Rd man/h5_list_add_dgCMatrix.Rd man/h5_list_add_mito_umis.Rd man/h5_list_cell_metadata.Rd man/h5_list_convert_from_dgCMatrix.Rd man/h5_list_convert_to_dgCMatrix.Rd man/h5_list_transpose.Rd man/h5dims.Rd man/h5dump.Rd man/h5exists.Rd man/h5ls.Rd man/hello.Rd man/is_unimodal.Rd man/make_singlet_summary.Rd man/qc_aligned_barplot.Rd man/qc_cutoff_barplot.Rd man/qc_flip.Rd man/qc_frac_hist_plot.Rd man/qc_hist_plot.Rd man/qc_scatter_plot.Rd man/qc_stacked_barplot.Rd man/qc_table.Rd man/qc_violin_plot.Rd man/read_csc_mtx.Rd man/read_h5_cell_meta.Rd man/read_h5_dgCMatrix.Rd man/read_h5_feature_meta.Rd man/read_h5_sce.Rd man/read_h5_seurat.Rd man/read_tenx_metrics.Rd man/reduce_h5_list.Rd man/select_hash_cutoff.Rd man/set_list_path.Rd man/split_h5_list_by_hash.Rd man/stm.Rd man/strip_1d_array_recursive.Rd man/subset_h5_list_by_observations.Rd man/totalseq_a_biotin.Rd man/totalseq_a_human.Rd man/totalseq_a_mouse.Rd man/varibow.Rd man/write_h5_list.Rd