tx_add_diffNucToRef: Add number of nucleotide reads different to the reference...

View source: R/deprecated.R

tx_add_diffNucToRefR Documentation

Add number of nucleotide reads different to the reference genome

Description

[Deprecated]

Usage

tx_add_diffNucToRef(DT)

Arguments

DT

data.table. A data.table object. See tx_makeDT_coverage, tx_makeDT_nucFreq or tx_makeDT_covNucFreq functions.

Details

Add a column to DT of the sum of nucleotide frequency different to the reference sequence counting deletions, without considering 'N's nor inserts '.' into the calculation.

Value

data.table


AngelCampos/txtools documentation built on May 8, 2022, 8:17 a.m.