tx_add_diffNucToRef: Add number of nucleotide reads different to the reference...
In AngelCampos/txtools: An interface between GenomicAlignments and transcriptomic representations
tx_add_diffNucToRef R Documentation
Add number of nucleotide reads different to the reference genome
Description
![[Deprecated]](../help/figures/lifecycle-deprecated.svg)
tx_add_diffNucToRef() was renamed to tx_add_misincCount()
Add a column to DT of the sum of nucleotide frequency different to the
reference sequence counting deletions, without considering 'N's nor inserts
'.' into the calculation.
Usage
tx_add_diffNucToRef(DT)
Arguments
DT
data.table. A data.table object. See
tx_makeDT_coverage, tx_makeDT_nucFreq or
tx_makeDT_covNucFreq functions.
Value
data.table
AngelCampos/txtools documentation built on June 5, 2023, 10:41 a.m.
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| tx_add_diffNucToRef | R Documentation |
Add number of nucleotide reads different to the reference genome
Description
tx_add_diffNucToRef() was renamed to tx_add_misincCount()
Add a column to DT of the sum of nucleotide frequency different to the reference sequence counting deletions, without considering 'N's nor inserts '.' into the calculation.
Usage
tx_add_diffNucToRef(DT)
Arguments
DT |
data.table. A data.table object. See
|
Value
data.table
AngelCampos/txtools documentation built on June 5, 2023, 10:41 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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