tx_add_startRatio1bpDS: Add starts to coverage ratio 1 bp downstream
In AngelCampos/txtools: An R package facilitating analysis of RNA modifications, structures, and interactions
tx_add_startRatio1bpDS R Documentation
Add starts to coverage ratio 1 bp downstream
Description
Add a column to DT of the read-starts to coverage ratio, shifted 1 base-pair
downstream. This means that the last measurement in any gene is always an NA
to account that there was no measurement to be shifted.
Usage
tx_add_startRatio1bpDS(DT, minCov = 50)
Arguments
DT
data.table. A table as output by the tx_makeDT_coverage(),
tx_makeDT_nucFreq() or tx_makeDT_covNucFreq() functions.
minCov
numeric. Minimum coverage required to output ratio. If coverage
is less then an NA is output in that position.
Value
data.table
AngelCampos/txtools documentation built on Sept. 16, 2024, 10:25 p.m.
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| tx_add_startRatio1bpDS | R Documentation |
Add starts to coverage ratio 1 bp downstream
Description
Add a column to DT of the read-starts to coverage ratio, shifted 1 base-pair downstream. This means that the last measurement in any gene is always an NA to account that there was no measurement to be shifted.
Usage
tx_add_startRatio1bpDS(DT, minCov = 50)
Arguments
DT |
data.table. A table as output by the |
minCov |
numeric. Minimum coverage required to output ratio. If coverage is less then an NA is output in that position. |
Value
data.table
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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