tx_add_misincRateNucSpec: Nucleotide specific misincorporation rate
In AngelCampos/txtools: An R package facilitating analysis of RNA modifications, structures, and interactions
tx_add_misincRateNucSpec R Documentation
Nucleotide specific misincorporation rate
Description
Calculates the misincorporation rate from a reference nucleotide to an
specific misincorporated nucleotide. For example, when looking for
positions in cytidines that were read as thymine in RNA after bisulphite treatment.
Usage
tx_add_misincRateNucSpec(DT, refNuc, misNuc, minNucReads = 20)
Arguments
DT
data.table. A table as output by the
tx_makeDT_nucFreq() or tx_makeDT_covNucFreq() functions.
refNuc
Reference nucleotide See tx_add_refSeqDT()
misNuc
Misincorporated nucleotide
minNucReads
Minimum number of nucleotides read needed to calculate
misincorporation rate
Value
data.table
AngelCampos/txtools documentation built on Sept. 16, 2024, 10:25 p.m.
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| tx_add_misincRateNucSpec | R Documentation |
Nucleotide specific misincorporation rate
Description
Calculates the misincorporation rate from a reference nucleotide to an specific misincorporated nucleotide. For example, when looking for positions in cytidines that were read as thymine in RNA after bisulphite treatment.
Usage
tx_add_misincRateNucSpec(DT, refNuc, misNuc, minNucReads = 20)
Arguments
DT |
data.table. A table as output by the
|
refNuc |
Reference nucleotide See |
misNuc |
Misincorporated nucleotide |
minNucReads |
Minimum number of nucleotides read needed to calculate misincorporation rate |
Value
data.table
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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