tx_add_rollingMean: Add rolling mean

In AngelCampos/txtools: An R package facilitating analysis of RNA modifications, structures, and interactions

Add rolling mean

Description

Add rolling mean

Usage

tx_add_rollingMean(
  DT,
  colName,
  winSize,
  newColName = NULL,
  fill = NA,
  align = "center",
  minCov = 20,
  nCores = 1
)

Arguments

DT	data.table. A table as output by the tx_makeDT_coverage(), tx_makeDT_nucFreq() or tx_makeDT_covNucFreq() functions.
colName	character. Column to which rolling mean will be applied
winSize	numeric. Size of window
newColName	character. Name to be given to the output. If left empty, will assign a default name, combination of the colName and winSize arguments.
fill	Either an empty vector (no fill), or a vector (recycled to) length 3 giving left, middle and right fills. By default NA.
align	character. Align windows on the "left", "center" or "right".
minCov	numeric. Minimum coverage required to output ratio. If coverage is less then an NA is output in that position. To output all positions assign 0.
nCores	integer. Number of cores to run the function with. Multicore capability is not available in Windows OS.

Value

data.table

AngelCampos/txtools documentation built on April 8, 2024, 6:06 p.m.