tx_add_misincRate: Add misincorporation to total nucleotide reads ratio

In AngelCampos/txtools: An R package facilitating analysis of RNA modifications, structures, and interactions

Add misincorporation to total nucleotide reads ratio

Description

Add a column to txDT of the ratio of different nucleotides to the total of nucleotide reads, not counting undetermined reads 'N' and inserts '.'.

Usage

tx_add_misincRate(DT, minNucReads = 20, addCounts = FALSE)

Arguments

DT	data.table. A table as output by the tx_makeDT_nucFreq() or tx_makeDT_covNucFreq() functions.
minNucReads	Minimum number of nucleotides read needed to calculate misincorporation rate
addCounts	Set to TRUE to add counts of total nucleotides read (nucTotal) and different to reference nucleotide (misincCount) columns.

Value

data.table

See Also

tx_add_diffNucToRef and tx_add_nucTotal

AngelCampos/txtools documentation built on Sept. 16, 2024, 10:25 p.m.