The function importCircMarker is specifically designed to read and adapt the CircMarker (July.24.2018) output file (Brief_sum.txt). See https://github.com/lxwgcool/CircMarker for more details.
A character string specifying the path to the file containing the detected circRNAs.
A data frame containing the formatted GTF file. This is generated
A data frame.
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# Load short version of the gencode v19 annotation file data("gtf") # Path to an example file containing circRNA detected by CircMarker pathToFile <- system.file("extdata", "circmarker/circRNAs_001.txt", package="circRNAprofiler") # Inner function. # Import circRNAs. # Due to the short version of the gtf file gene names might miss in the # returned output. importCircMarker(pathToFile, gtf)
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