View source: R/importFilesPredictionTool.R
importCircMarker | R Documentation |
The function importCircMarker is specifically designed to read and adapt the CircMarker (July.24.2018) output file (Brief_sum.txt). See https://github.com/lxwgcool/CircMarker for more details.
importCircMarker(pathToFile, gtf)
pathToFile |
A character string specifying the path to the file containing the detected circRNAs. |
gtf |
A data frame containing the formatted GTF file. This is generated
with |
A data frame.
# Load short version of the gencode v19 annotation file
data("gtf")
# Path to an example file containing circRNA detected by CircMarker
pathToFile <- system.file("extdata", "circmarker/circRNAs_001.txt",
package="circRNAprofiler")
# Inner function.
# Import circRNAs.
# Due to the short version of the gtf file gene names might miss in the
# returned output.
importCircMarker(pathToFile, gtf)
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