plotTotExons: Plot exons in the circRNA host transcript

Description Usage Arguments Value Examples

View source: R/getPlots.R

Description

The function plotTotExons() generates a bar chart showing the total number of exons (totExon column) in the transcripts selected for the downstream analysis.

Usage

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plotTotExons(annotatedBSJs, title = "")

Arguments

annotatedBSJs

A data frame with the annotated back-spliced junctions. This data frame can be generated with annotateBSJs.

title

A character string specifying the title of the plot

Value

A ggplot object.

Examples

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# Load data frame containing detected back-spliced junctions
data("mergedBSJunctions")

# Load short version of the gencode v19 annotation file
data("gtf")

# Annotate the first 10 back-spliced junctions
annotatedBSJs <- annotateBSJs(mergedBSJunctions[1:10, ], gtf)

# Plot
p <- plotTotExons(annotatedBSJs, title = "")
p

Aufiero/circRNAprofiler documentation built on July 22, 2021, 9:34 p.m.