plotTotExons: Plot exons in the circRNA host transcript

In Aufiero/circRNAprofiler: circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs

Plot exons in the circRNA host transcript

Description

The function plotTotExons() generates a bar chart showing the total number of exons (totExon column) in the transcripts selected for the downstream analysis.

Usage

plotTotExons(annotatedBSJs, title = "")

Arguments

annotatedBSJs	A data frame with the annotated back-spliced junctions. This data frame can be generated with annotateBSJs.
title	A character string specifying the title of the plot

Value

A ggplot object.

Examples

# Load data frame containing detected back-spliced junctions
data("mergedBSJunctions")

# Load short version of the gencode v19 annotation file
data("gtf")

# Annotate the first 10 back-spliced junctions
annotatedBSJs <- annotateBSJs(mergedBSJunctions[1:10, ], gtf)

# Plot
p <- plotTotExons(annotatedBSJs, title = "")
p

Aufiero/circRNAprofiler documentation built on Nov. 3, 2024, 10:12 a.m.