importOther: Import circRNAs detected by an annotation-based circRNA...
In Aufiero/circRNAprofiler: circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs
View source: R/importFilesPredictionTool.R
importOther R Documentation
Import circRNAs detected by an annotation-based circRNA
detection tool
Description
The function importOther() is designed to read output file from a
annotation-based circRNA detection tool. The user after the detection of the
crcRNAs must format the output file, so that it has the following columns
with header: gene, strand, chrom, startUpBSE, endDownBSE and coverage.
If more columns are present they will be discared.
Usage
importOther(pathToFile)
Arguments
pathToFile
A character string specifying the path to the file
containing the detected circRNAs.
Value
A data frame.
Examples
# Path to an example file containing circRNAs
pathToFile <- system.file("extdata", "tool1/circRNAs_001.txt",
package="circRNAprofiler")
# Inner function.
# Import circRNAs
importOther(pathToFile)
Aufiero/circRNAprofiler documentation built on Nov. 3, 2024, 10:12 a.m.
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View source: R/importFilesPredictionTool.R
| importOther | R Documentation |
Import circRNAs detected by an annotation-based circRNA detection tool
Description
The function importOther() is designed to read output file from a annotation-based circRNA detection tool. The user after the detection of the crcRNAs must format the output file, so that it has the following columns with header: gene, strand, chrom, startUpBSE, endDownBSE and coverage. If more columns are present they will be discared.
Usage
importOther(pathToFile)
Arguments
pathToFile |
A character string specifying the path to the file containing the detected circRNAs. |
Value
A data frame.
Examples
# Path to an example file containing circRNAs
pathToFile <- system.file("extdata", "tool1/circRNAs_001.txt",
package="circRNAprofiler")
# Inner function.
# Import circRNAs
importOther(pathToFile)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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