importNCLscan: Import circRNAs detected by NCLscan

View source: R/importFilesPredictionTool.R

importNCLscanR Documentation

Import circRNAs detected by NCLscan

Description

The function importNCLscan is specifically designed to read and adapt the NCLscan v1.4 output file (e.g. MyProject.result). Only intragenic circRNAs are kept in the analysis. See https://github.com/TreesLab/NCLscan for more details.

Usage

importNCLscan(pathToFile)

Arguments

pathToFile

A character string specifying the path to the file containing the detected circRNAs.

Value

A data frame.

Examples

# Path to an example file containing circRNAs detected by NCLscan
pathToFile <- system.file("extdata", "nclscan/circRNAs_001.txt",
    package="circRNAprofiler")

# Inner function.
# Import circRNAs
importNCLscan(pathToFile)


Aufiero/circRNAprofiler documentation built on Oct. 31, 2023, 1:18 a.m.