importNCLscan: Import circRNAs detected by NCLscan

Description Usage Arguments Value Examples

View source: R/importFilesPredictionTool.R

Description

The function importNCLscan is specifically designed to read and adapt the NCLscan v1.4 output file (e.g. MyProject.result). Only intragenic circRNAs are kept in the analysis. See https://github.com/TreesLab/NCLscan for more details.

Usage

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importNCLscan(pathToFile)

Arguments

pathToFile

A character string specifying the path to the file containing the detected circRNAs.

Value

A data frame.

Examples

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# Path to an example file containing circRNAs detected by NCLscan
pathToFile <- system.file("extdata", "nclscan/circRNAs_001.txt",
    package="circRNAprofiler")

# Inner function.
# Import circRNAs
importNCLscan(pathToFile)

Aufiero/circRNAprofiler documentation built on July 22, 2021, 9:34 p.m.