Files in BIMSBbioinfo/ciRcus
Annotation, analysis and visualization of circRNA data
.Rbuildignore
.Rinstignore
.gitignore
.lintr
.travis.yml
CHANGELOG.md
DESCRIPTION
NAMESPACE
R/annotate.R
R/circbase.R
R/circus.R
R/exportData.R
R/filterData.R
R/quantification.R
R/readData.R
R/summarize.R
R/utils.R
R/visualize.R
README.md
ciRcus.Rproj
inst/.lintr
inst/extdata/Sy5y_D0_sites.bed
inst/extdata/ciri_demo_hek/HEK_RNaseR_CIRI_sites.txt
inst/extdata/ciri_demo_hek/HEK_riborezo_CIRI_sites.txt
inst/extdata/db/hsa_ens75_minimal.sqlite
inst/extdata/db/test.sqlite
inst/extdata/encode_demo_small/FrontalCortex_rep1_sites.bed
inst/extdata/encode_demo_small/FrontalCortex_rep2_sites.bed
inst/extdata/encode_demo_small/HeartF_rep1_sites.bed
inst/extdata/encode_demo_small/HeartF_rep2_sites.bed
inst/extdata/encode_demo_small/Liver_rep1_sites.bed
inst/extdata/encode_demo_small/Liver_rep2_sites.bed
inst/scripts/test_load_data.R
man/AnnotateRanges.Rd
man/MungeColumn.Rd
man/ProcessLinear.Rd
man/annotPie-methods.Rd
man/annotateCircs-methods.Rd
man/annotateFlanks.Rd
man/annotateHostGenes.Rd
man/annotateJunctions.Rd
man/bedTracks-methods.Rd
man/ciRcus.Rd
man/circLinRatio-methods.Rd
man/ensg2name.Rd
man/getIDs.Rd
man/getStudiesList.Rd
man/gtf2sqlite.Rd
man/histogram-methods.Rd
man/loadAnnotation-methods.Rd
man/qualFilter.Rd
man/readCircs.Rd
man/resTable-methods.Rd
man/summarizeCircs-methods.Rd
man/testCoordinateIndexing.Rd
man/uniqReadsQC-methods.Rd
man/writeBedTracks-methods.Rd
tests/testthat.R
tests/testthat/test-exportData.R
tests/testthat/test-lint.R
tests/testthat/test-loadAnnot.R
vignettes/ciRcusManual.rmd
