calcData: helper function to calculate a row-wise function (like mean,...

In BenBruyneel/proteinDiscover: ProteinDiscover

helper function to calculate a row-wise function (like mean, median etc) across a data.frame

Description

helper function to calculate a row-wise function (like mean, median etc) across a data.frame

Usage

calcData(
  data,
  setNAZero = NA,
  removeNAs = FALSE,
  keepData = FALSE,
  calcName = "median",
  calcFunc = stats::median,
  ...
)

Arguments

data	the data.frame. Note that all rows and columns are used, so selection, filtering, etc should be done beforehand
setNAZero	default = NA, when NA this is ignored. Otherwise all cells containing NA will be set to the value of setNAZero. When removeNAs = TRUE, this parameter is ignored
removeNAs	default = FALSE, if TRUE all rows containing NA's will be removed via na.omit()
keepData	if TRUE, then the original data is returned also
calcName	name of the column with the calculated values in it
calcFunc	function to be applied row-wise across the data.frame
...	serves to pass on "extra" arguments on to the calcFunc function, eg na.rm = TRUE in case of calcFunc = mean

Value

a data.frame with the calculated values as the only column or with the calculated values as a mew column

BenBruyneel/proteinDiscover documentation built on March 16, 2024, 4:36 p.m.