dbGetConsensusTable: get the Consensus Features table belonging to the...

In BenBruyneel/proteinDiscover: ProteinDiscover

get the Consensus Features table belonging to the ConsensusIDs

Description

get the Consensus Features table belonging to the ConsensusIDs

Usage

dbGetConsensusTable(
  db,
  consensusIDs = NA,
  columns = NA,
  masterProtein = TRUE,
  sortorder = NA,
  SQL = FALSE
)

Arguments

db	database access 'handle'
consensusIDs	the PsmIDs to be retrieved. This can be in numeric or character vector format OR the output from the dbGetConsensusIDs function (a data.frame with column "ConsensusFeaturesId")
columns	allows the selection of columns to take from the table, default = NA (all columns)
masterProtein	use the IsMasterProtein column to be zero, default == TRUE. If more advanced filtering is needed, use db_getTable()
sortorder	allows for sorting of the selected columns, default = NA, (no sorting). Other valid values are a single character string ("ASC" or "DESC") or a character vector of the same length as the columnNames vector containing a series of "ASC" or "DESC"
SQL	allows the function to return the SQL query statement in stead of a data.frame

Value

a data.frame containing requested data from the peptide table or a character string specifying a SQL query

BenBruyneel/proteinDiscover documentation built on March 16, 2024, 4:36 p.m.