dbGetProteinTable: get the protein table from a .pdResult file (essentially a...

In BenBruyneel/proteinDiscover: ProteinDiscover

get the protein table from a .pdResult file (essentially a wrapper around db_getTable())

Description

get the protein table from a .pdResult file (essentially a wrapper around db_getTable())

Usage

dbGetProteinTable(
  db,
  columns = NA,
  masterProtein = TRUE,
  sortorder = NA,
  SQL = FALSE
)

Arguments

db	database access 'handle'
columns	allows the selection of columns to take from the table, default = NA (all columns)
masterProtein	use the IsMasterProtein column to be zero, default == TRUE. If more advanced filtering is needed, use db_getTable()
sortorder	allows for sorting of the selected columns, default = NA, (no sorting). Other valid values are a single character string ("ASC" or "DESC") or a character vector of the same length as the columnNames vector containing a series of "ASC" or "DESC"
SQL	allows the function to return the SQL query statement in stead of a data.frame

Value

a data.frame containing requested data from the protein table or a character string specifying a SQL query

BenBruyneel/proteinDiscover documentation built on March 16, 2024, 4:36 p.m.