dbGetPeptideIDs: get the peptideID's from (a set of) proteinGroupIDs

In BenBruyneel/proteinDiscover: ProteinDiscover

get the peptideID's from (a set of) proteinGroupIDs

Description

get the peptideID's from (a set of) proteinGroupIDs

Usage

dbGetPeptideIDs(db, proteinGroupIDs, SQL = FALSE)

Arguments

db	database access 'handle'
proteinGroupIDs	the proteinGroupIDs usually come from the TargetProtein Table. This can be in numeric or character vector format
SQL	allows the function to return the SQL query statement in stead of a data.frame

Value

a data.frame containing requested data from the TargetProteinGroupsTargetPeptideGroups table or a character string specifying an SQL query

Note

to get the proteinpeptidelink (table = "TargetProteinGroupsTargetPeptideGroups"). In goes "ProteinGroupID" from the table "TargetProteins" (Note: it's possible to use a c(,,,) to get the result for a number of proteins at the same time). The result is a list of numbers which are the "TargetProteinGroupsProteinGroupID" in the "TargetPeptideGroups" table

BenBruyneel/proteinDiscover documentation built on March 16, 2024, 4:36 p.m.