dbGetProteinIDs: Function to get proteinUniqueID's from a (set of) protein...

In BenBruyneel/proteinDiscover: ProteinDiscover

Function to get proteinUniqueID's from a (set of) protein groupID's (eg from a proteinGroup tables, or dbGetProteinGroupIDs). This allows for getting all proteins (also non-master proteins) which together make up a protein group. Normally only the master protein is shown in a protein table

Description

Function to get proteinUniqueID's from a (set of) protein groupID's (eg from a proteinGroup tables, or dbGetProteinGroupIDs). This allows for getting all proteins (also non-master proteins) which together make up a protein group. Normally only the master protein is shown in a protein table

Usage

dbGetProteinIDs(db, proteinGroupIDs, SQL = FALSE)

Arguments

db	database access 'handle'
proteinGroupIDs	the protein group(s) for which the UniqueSequenceID's should be retrieved. This can also be a (collpased) character vector where the protein groups are separated by ';'
SQL	allows the function to return the SQL query statement in stead of a data.frame#'

Value

a data.frame or a character vector (SQL)#'

Note

every protein in the protein table has a ProteinGroupID & a UniqueSequenceID. The UniqueSequenceID is untique to the protein. A protein group may contain more than one protein (and thus also more than one UniqueSequenceID)

BenBruyneel/proteinDiscover documentation built on March 16, 2024, 4:36 p.m.