getPeptideInfoRaw: get peptide information from the peptide table from a...

In BenBruyneel/proteinDiscover: ProteinDiscover

get peptide information from the peptide table from a pdResult file based on the provided proteinAccession (uniprot) codes. Raw columns are not "translated"

Description

get peptide information from the peptide table from a pdResult file based on the provided proteinAccession (uniprot) codes. Raw columns are not "translated"

Usage

getPeptideInfoRaw(
  db,
  columns = "AbundancesNormalized",
  addStandardColumns = TRUE,
  proteinAccessions = knockOutProteins()$Accession
)

Arguments

db	database access 'handle'
columns	allows the selection of columns to take from the table. The columns: PeptideGroupID, Sequence, Modifications, QuanInfo are automatically included. Default column to be retrieved is AbundancesNormalized
addStandardColumns	if TRUE then the following columns are added by default to the columnNames argument: "PeptideGroupID", "Sequence", "Modifications" & "QuanInfo". Please note that this will give problems if these columns are also in the columnNames argument
proteinAccessions	defines from which protein(s) info will be retrieved (character vector)

Value

a named list of data.frames (the names are the proteinAccessions)

BenBruyneel/proteinDiscover documentation built on March 16, 2024, 4:36 p.m.